NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24654.1 Public Mus musculus 11 Hnrnpab 23 108 98 CCDS HistoryNCBI Gene:15384Re-query CCDS DB by CCDS ID:24654.1Re-query CCDS DB by GeneID:15384See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074669.9 ENSMUSP00000074238.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074669.9Link to Ensembl Protein Viewer:ENSMUSP00000074238.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000074669Re-query CCDS DB by Protein ID:ENSMUSP00000074238
Original member Current member NCBI NM_010448.3 NP_034578.1 Accepted alive Link to Nucleotide Sequence:NM_010448.3Link to Protein Sequence:NP_034578.1Re-query CCDS DB by Nucleotide ID:NM_010448Re-query CCDS DB by Protein ID:NP_034578Link to BLAST:NP_034578.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034578.1 285 Q99020 285 100% 0 0

Chromosomal Locations for CCDS 24654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51601408 51601478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51602593 51602695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51604400 51604531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51604659 51604817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51605461 51605629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51606340 51606563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGTCGGACGCGGCTGAGGAGCAGCCCATGGAGACGACGGGCGCCACCGAGAACGGACACGAGGCCGCCC
CCGAAGGCGAGGCCCCGGTCGAGCCCAGCGCGGCTGCCGCGGCCCCCGCGGCCTCGGCCGGGTCTGGGGG
CGGGACCACGACCGCACCGAGCGGGAACCAGAACGGCGCGGAGGGCGACCAGATCAACGCCAGCAAGAAC
GAGGAGGACGCGGGAAAAATGTTCGTTGGTGGTCTGAGCTGGGATACCAGCAAAAAAGACTTAAAGGATT
ATTTTACTAAGTTTGGAGAGGTTGTTGACTGTACAATAAAAATGGATCCCAACACTGGACGATCAAGAGG
GTTTGGGTTTATTCTCTTCAAAGATTCTTCTAGTGTGGAAAAGGTCTTAGATCAGAAGGAGCACAGGCTG
GATGGTCGTGTCATTGACCCTAAAAAGGCTATGGCTATGAAGAAGGACCCTGTGAAGAAAATCTTTGTGG
GAGGTCTAAACCCTGAAGCCACAGAGGAAAAGATCAGAGAATACTTCGGCCAGTTTGGGGAGATTGAGGC
CATTGAGCTTCCAATAGATCCCAAGTTGAACAAAAGACGGGGTTTTGTTTTTATTACATTTAAAGAGGAA
GATCCTGTGAAGAAAGTTCTGGAGAAGAAATTTCATACTGTCAGTGGAAGCAAGTGTGAAATCAAGGTTG
CCCAGCCCAAAGAGGTGTATCAGCAACAGCAGTATGGCTCTGGGGGCAGAGGAAATCGCAATCGAGGGAA
CCGAGGCAGTGGTGGAGGTCAGGGTAGTACAAATTACGGAAAGAGCCAGCGACGTGGTGGTCATCAGAAT
AACTACAAGCCATACTGA

Translation (285 aa):
MSDAAEEQPMETTGATENGHEAAPEGEAPVEPSAAAAAPAASAGSGGGTTTAPSGNQNGAEGDQINASKN
EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRL
DGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEE
DPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQGSTNYGKSQRRGGHQN
NYKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH