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Report for CCDS24493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24493.1 Public Mus musculus 11 Cfap36 23 108 98 CCDS HistoryNCBI Gene:216618Re-query CCDS DB by CCDS ID:24493.1Re-query CCDS DB by GeneID:216618See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020754.9 ENSMUSP00000020754.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020754.9Link to Ensembl Protein Viewer:ENSMUSP00000020754.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020754Re-query CCDS DB by Protein ID:ENSMUSP00000020754
Original member Current member NCBI NM_025740.3 NP_080016.1 Accepted alive Link to Nucleotide Sequence:NM_025740.3Link to Protein Sequence:NP_080016.1Re-query CCDS DB by Nucleotide ID:NM_025740Re-query CCDS DB by Protein ID:NP_080016Link to BLAST:NP_080016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080016.1 343 Q8C6E0 343 100% 0 0

Chromosomal Locations for CCDS 24493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 29221884 29221985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29222434 29222583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29222744 29222883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29225857 29225959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29229908 29229959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29230586 29230673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29234358 29234472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29244059 29244160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29245086 29245150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29247015 29247129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGCTGCGGAAGAAGAGGACGAAGTGGAATGGGTGGTGGAGAGCATCGCTGGGTTCCTGCGGGGCCCGG
ATTGGTCTATCCCCATCTTGGACTTTGTGGAGCAGAAATGCGAAGTTTTTGATGATGAAGAAGAAAGCAA
ATTAACCTACACAGAAATCCATCAAGAATACAAAGAGCTGGTTGAAAAGCTGTTAGAAAGTTACCTCAAA
GAGATTGGAATTAATGAAGATCAGTTTCAAGAAGCGTGCACGTCCCCTCTGGCGAAGACGCGCACATCAC
AGGCCATTTTGCAGCCTGTGTTGGCAGCAGAAGATTTTACTATCTTTAAAGCAATGATGGTCCAGAAGAA
CATTGAAATGCAGCTTCAAGCCATCCGAATAATCCAGGAGAGGAATGGTGTGTTACCTGACTGCTTAACT
GATGGTGCAGATGTGGTCAGTGACCTTGAACAGGAAGAGATGAAAATTCTAAGAGAGGTCCTCAGAAAAT
CAAAAGAAGAATATGACCAGGAGGAAGAAAGGAAACGAAAAAAGCAGTCATCAGAGGCTAAAATGGAAGA
ACTGCCAGTATACACGAGTGAAGCTGAAAAAATGAGTAATTCCCAAGGGGATGGTGAACACTTTGTACAG
CCACCCTCAGAAGTTAAAGTGCATTTTGCTAATCAGTCAGTACAACCCTTGGCAAGAAAGATGGAGTTGT
TGCCTGAAACTTCCTCCCTCACACAAAAAGGTTTGAAGATACCTGGCTTAGAGCATGCAAGCATGGAAGG
ACCAATAGCAAATTTGTCAGCACTTGGAACAGAAGAGTTACGTCAACGAGAGCATTATCTCAAGCAGAAG
AGAGATAAGCTGCTGTCCATGAGAAAGGATACGAGGACAAAGCAGATCCAGAATACTGAGCAAAAAGGAA
AGCCTACCAGGGAGGCAGAGGAAATGACAGAGAAGCCAGAAATGACAGCAGAGGAGAAACAAACATTACT
AAAGAGGCGATTGCTTGCAGAGAAACTTAAAGAAGAAGTTATTAATAAGTAA

Translation (343 aa):
MAAEEEDEVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELVEKLLESYLK
EIGINEDQFQEACTSPLAKTRTSQAILQPVLAAEDFTIFKAMMVQKNIEMQLQAIRIIQERNGVLPDCLT
DGADVVSDLEQEEMKILREVLRKSKEEYDQEEERKRKKQSSEAKMEELPVYTSEAEKMSNSQGDGEHFVQ
PPSEVKVHFANQSVQPLARKMELLPETSSLTQKGLKIPGLEHASMEGPIANLSALGTEELRQREHYLKQK
RDKLLSMRKDTRTKQIQNTEQKGKPTREAEEMTEKPEMTAEEKQTLLKRRLLAEKLKEEVINK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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