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Report for CCDS24462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24462.1 Public Mus musculus 11 Peli1 23 108 98 CCDS HistoryNCBI Gene:67245Re-query CCDS DB by CCDS ID:24462.1Re-query CCDS DB by GeneID:67245See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093290.11 ENSMUSP00000090979.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093290.11Link to Ensembl Protein Viewer:ENSMUSP00000090979.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093290Re-query CCDS DB by Protein ID:ENSMUSP00000090979
Original member Current member EBI ENSMUST00000101477.1 ENSMUSP00000099018.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101477.1Link to Ensembl Protein Viewer:ENSMUSP00000099018.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101477Re-query CCDS DB by Protein ID:ENSMUSP00000099018
Original member Current member NCBI NM_023324.2 NP_075813.2 Accepted alive Link to Nucleotide Sequence:NM_023324.2Link to Protein Sequence:NP_075813.2Re-query CCDS DB by Nucleotide ID:NM_023324Re-query CCDS DB by Protein ID:NP_075813Link to BLAST:NP_075813.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075813.2 418 Q8C669 418 100% 0 0

Chromosomal Locations for CCDS 24462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 21136115 21136185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21140564 21140693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21142556 21142657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21146915 21147112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21147258 21147446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 21147957 21148523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGTTTTCTCCTGATCAAGAAAATCATCCTTCCAAAGCCCCAGTAAAATATGGCGAACTCATTGTCTTAG
GATATAATGGATCTCTCCCAAACGGTGATAGAGGAAGGAGGAAAAGTAGGTTTGCTTTGTTTAAAAGACC
TAAGGCAAATGGGGTGAAGCCTAGCACCGTGCACATTGCATGTACTCCTCAGGCTGCCAAGGCAATAAGC
AACAAGGACCAGCATAGCATATCATATACTTTATCTCGAGCCCAGACGGTGGTGGTTGAATATACTCATG
ACAGCAACACTGATATGTTTCAGATTGGTCGGTCAACTGAAAGTCCTATTGATTTTGTAGTAACTGACAC
CGTTCCTGGAAGTCAGAGTAATTCCGACACGCAGTCAGTACAAAGCACTATATCAAGATTTGCCTGTAGG
ATCATATGTGAGCGCAGTCCCCCCTTTACAGCTCGGATTTATGCTGCAGGGTTTGATTCATCAAAAAACA
TCTTTCTTGGGGAGAAGGCTGCCAAGTGGAAGACATCTGATGGGCAGATGGATGGCTTGACCACTAATGG
AGTTCTTGTGATGCATCCACGTAATGGGTTCACAGAAGACTCCAAACCTGGAATATGGAGAGAAATATCA
GTATGTGGGAACGTCTTCAGTCTGCGTGAAACCAGATCAGCTCAGCAGAGAGGAAAGATGGTGGAAATTG
AAACCAATCAGCTACAAGATGGCTCCTTAATTGACCTTTGTGGTGCAACCTTGCTGTGGCGTACTGCAGA
AGGCCTTTCCCATACTCCTACTGTGAAGCACTTAGAAGCTTTAAGACAGGAGATCAATGCAGCTCGGCCG
CAGTGCCCTGTAGGGTTCAACACACTAGCCTTCCCCAGTATGAAGAGGAAGGATGTTGTAGATGAAAAGC
AACCATGGGTATATCTAAACTGCGGCCATGTCCATGGTTATCATAACTGGGGAAACAAAGAAGAACGTGA
CGGCAAAGATCGTGAATGTCCTATGTGTAGGTCTGTTGGTCCCTATGTCCCTCTGTGGCTTGGATGTGAA
GCTGGATTTTATGTGGACGCCGGCCCTCCCACCCATGCCTTTAGCCCCTGTGGGCACGTGTGTTCAGAAA
AGACAACGGCTTACTGGTCCCAGATCCCACTTCCTCATGGTACGCACACTTTTCATGCAGCCTGCCCCTT
CTGTGCACATCAGTTGGCTGGTGAACAAGGCTATATCAGACTTATTTTCCAAGGACCTTTAGACTAG

Translation (418 aa):
MFSPDQENHPSKAPVKYGELIVLGYNGSLPNGDRGRRKSRFALFKRPKANGVKPSTVHIACTPQAAKAIS
NKDQHSISYTLSRAQTVVVEYTHDSNTDMFQIGRSTESPIDFVVTDTVPGSQSNSDTQSVQSTISRFACR
IICERSPPFTARIYAAGFDSSKNIFLGEKAAKWKTSDGQMDGLTTNGVLVMHPRNGFTEDSKPGIWREIS
VCGNVFSLRETRSAQQRGKMVEIETNQLQDGSLIDLCGATLLWRTAEGLSHTPTVKHLEALRQEINAARP
QCPVGFNTLAFPSMKRKDVVDEKQPWVYLNCGHVHGYHNWGNKEERDGKDRECPMCRSVGPYVPLWLGCE
AGFYVDAGPPTHAFSPCGHVCSEKTTAYWSQIPLPHGTHTFHAACPFCAHQLAGEQGYIRLIFQGPLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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