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Report for CCDS24359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24359.1 Public Mus musculus 11 Limk2 23 108 98 CCDS HistoryNCBI Gene:16886Re-query CCDS DB by CCDS ID:24359.1Re-query CCDS DB by GeneID:16886See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101642.9 ENSMUSP00000099165.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101642.9Link to Ensembl Protein Viewer:ENSMUSP00000099165.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101642Re-query CCDS DB by Protein ID:ENSMUSP00000099165
Original member Current member NCBI NM_173053.2 NP_774958.1 Accepted alive Link to Nucleotide Sequence:NM_173053.2Link to Protein Sequence:NP_774958.1Re-query CCDS DB by Nucleotide ID:NM_173053Re-query CCDS DB by Protein ID:NP_774958Link to BLAST:NP_774958.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_774958.1 617 O54785-2 617 100% 0 0

Chromosomal Locations for CCDS 24359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3345740 3345884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3346235 3346392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3347052 3347107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3347574 3347748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3348594 3348659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3350392 3350448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3350642 3350773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3352291 3352377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3353277 3353463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3355273 3355469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3355811 3355916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3358110 3358298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3358995 3359104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3360451 3360586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3370969 3371021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGGGAGTTACTTGTCTGTCCCGGCTTACTTCACCTCCAGAGACCCCTTTAGGTGTTCCGAATGCCAGG
AATCCCTCACCAACTGGTACTATGAGAAGGATGGGAAGCTGTACTGCCACAAGGACTACTGGGCCAAGTT
TGGAGAATTCTGCCATGGGTGCTCCCTGCTGATGACGGGGCCAGCCATGGTGGCTGGGGAGTTTAAGTAC
CACCCAGAGTGCTTTGCCTGCATGAGTTGCAAGGTGATCATTGAGGATGGAGATGCATATGCCCTGGTGC
AGCACGCTACACTCTACTGTGGGAAGTGCCACAACGAGGTGGTGCTGGCACCCATGTTTGAAAGACTGTC
TACAGAGTCTGTCCAGGATCAGCTGCCCTACTCTGTCACGCTCATCTCCATGCCTGCTACCACCGAGTGT
AGACGCGGCTTCTCGGTGACTGTGGAAAGTGCCTCTTCTAACTATGCCACCACCGTTCAAGTGAAAGAGG
TCAACCGGATGCACATCAGTCCCAACAACCGAAATGCCATCCACCCTGGGGACCGCATCTTGGAGATCAA
TGGGACCCCTGTCCGTACTCTGCGAGTAGAGGAGGTGGAGGATGCAATAAAGCAGACAAGCCAGACACTT
CAGCTGCTGATTGAACATGACCCTGTGCCCCAGCGCCTGGACCAGCTACGGCTAGATGCCCGACTTCCTC
CCCACATGCAGAGCACCGGACACACGCTCATGCTCAGCACCTTGGACACCAAGGAGAATCAGGAGGGGAC
ACTGAGGAGACGTTCTCTGAGGCGCAGTAACAGCATCTCCAAGTCTCCGGGCCCCAGCTCCCCCAAGGAG
CCCCTGCTCCTCAGCCGGGACATAAGCCGCTCAGAATCCCTCCGCTGCTCTAGCAGCTACTCCCAGCAGA
TCTTCCGGCCCTGCGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTTGGGCAGGCCATCAAGGT
GACTCACAAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTGATCCGCTGTGATGAGGAAACCCAGAAG
ACTTTCCTGACTGAGGTGAAAGTGATGCGGAGCCTGGACCACCCTAATGTGCTCAAGTTCATCGGAGTTC
TGTACAAGGACAAGAAGCTGAATCTGCTGACCGAGTACATCGAGGGAGGCACACTCAAAGACTTCCTGCG
CAGTGTGGACCCGTTCCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCATCTCCTCTGGAATGGCCTAT
TTACACTCCATGTGCATCATCCACCGGGACCTGAACTCACACAACTGTCTCATCAAATTGGACAAGACAG
TGGTAGTAGCCGACTTTGGGCTGTCACGGCTTATAGTAGAAGAGAGGAAAAGGCCTCCAGTAGAGAAGGC
CACCACCAAGAAACGCACCTTACGCAAGAGTGACCGCAAAAAGCGCTACACTGTGGTGGGAAACCCCTAC
TGGATGGCCCCCGAGATGCTGAATGGCAAGAGCTACGATGAGACGGTGGATGTCTTCTCTTTTGGGATCG
TTCTCTGTGAGATCATTGGGCAGGTATATGCGGATCCTGATTGCCTGCCCCGCACACTGGACTTTGGCCT
CAATGTTAAGCTTTTCTGGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTGCT
ATCTGCTGCAAACTAGAGCCTGAAAGCAGACCGGCATTCTCAAAGCTGGAGGACTCGTTCGAGGCGCTCT
CCCTGTTCTTGGGGGAGCTGGCCATCCCACTGCCAGCAGAGCTGGAAGACCTGGACCACACTGTGAGCAT
GGAGTATGGCCTAACCCGGGACTCGCCACCCTAG

Translation (617 aa):
MGSYLSVPAYFTSRDPFRCSECQESLTNWYYEKDGKLYCHKDYWAKFGEFCHGCSLLMTGPAMVAGEFKY
HPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVLAPMFERLSTESVQDQLPYSVTLISMPATTEC
RRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTL
QLLIEHDPVPQRLDQLRLDARLPPHMQSTGHTLMLSTLDTKENQEGTLRRRSLRRSNSISKSPGPSSPKE
PLLLSRDISRSESLRCSSSYSQQIFRPCDLIHGEVLGKGFFGQAIKVTHKATGKVMVMKELIRCDEETQK
TFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRSVDPFPWQQKVRFAKGISSGMAY
LHSMCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKATTKKRTLRKSDRKKRYTVVGNPY
WMAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAFFPLAA
ICCKLEPESRPAFSKLEDSFEALSLFLGELAIPLPAELEDLDHTVSMEYGLTRDSPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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