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Report for CCDS24281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24281.1 Public Mus musculus 10 Zc3h10 23 108 98 CCDS HistoryNCBI Gene:103284Re-query CCDS DB by CCDS ID:24281.1Re-query CCDS DB by GeneID:103284See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040572.9 ENSMUSP00000042727.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040572.9Link to Ensembl Protein Viewer:ENSMUSP00000042727.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040572Re-query CCDS DB by Protein ID:ENSMUSP00000042727
Original member Current member NCBI NM_134003.2 NP_598764.1 Accepted alive Link to Nucleotide Sequence:NM_134003.2Link to Protein Sequence:NP_598764.1Re-query CCDS DB by Nucleotide ID:NM_134003Re-query CCDS DB by Protein ID:NP_598764Link to BLAST:NP_598764.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598764.1 435 Q8R205 435 100% 0 0

Chromosomal Locations for CCDS 24281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128544179 128545486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGCCTGACCGGGACAGCTATGCCAACGGCACTGGCAGCAGCGGTGGAGGCCCTGGAGGTGGTGGCAGTG
AGGAGGCCAGTGGGGCAGGGACAGGCAGCGGGGGAGCCACCTCAGATGCCATCTGTAGAGACTTCCTGAG
GAACGTCTGCAAACGAGGCAAGCGATGTCGATACCGCCACCCAGACATGAGTGAGGTATCCAATTTGGGG
GTAAGCAAAAATGAATTTATCTTCTGCCATGACTTCCAAAACAAGGAGTGTAGCCGCCCCAACTGTCGTT
TCATCCACGGCTCCAAGGAGGATGAGGATGGCTATAAGAAGACAGGAGAGCTGCCTCCCCGGCTGAGGCA
GAAAGTGGCCGCTGGGCTGGGTCTCTCACCCGCCGACCTACCCAATGGTAAGGAGGAGGTCCCCATCTGC
CGCGACTTCCTCAAAGGTGACTGTCAGAGAGGAGCCAAGTGCAAGTTTCGTCACCTGCAAAGGGATTTTG
AGTTTGATGCTCGCGGTGGAGGAGGCACTGGAGGTGGAGGCTCCACAGGCTCTGCTCCCCCAGGACGCCG
TCATGATCTCTATGACATCTACGACCTTCCGGAAAGGGGCTTTGAGGACCACGAACCAGGCCCTAAGCGC
CGGAGAGGTGGCTGCTGCCCTCCTGACGGCCCCCATTTCGAGTCCTACGAATGTAACTTGGCTCCGCTCC
GTGGGGTTGAGTGCAGACTGCTGGAGGAGGAGAACGCCCTGCTCAGGAAACGCGTGGAGGAGCTGAAGAA
GCAGGTCAGCAACCTGCTGGCCACCAATGAGGTACTTCTGGAGCAGAATGCCCAGTTCCGGAATCAGGCC
AAGGTGATGACTCTGAGCTCCACTGCCCCCGCGACTGAGCAGACCCTGGCCCCCACTGTGGGCACAGTGG
CCACTTTTAACCATGGCATCGCCCAGACTCATACCACTCTGAGCAGCCAGGCTCTACAGCCTCGGCCTGT
GTCCCAGCAAGAACTTGTTGCTCCCACAGGGGCACCGGCTGCTCCCCCGACTAATGCTGCACCTCCTGCC
GCTCCGCCGCCCCCACCTCCACACCTGAACCCCGAGATCACGCCGCTGTCAGCCGCTCTGGCTCAGACCA
TCGCCCAGGGGATGGCACCCCCACCTGTTTCCATGGCCCCTGTAGCTGTGTCTGTGGCTCCTGTGGCTCC
TGTGGCTGTGTCCATGGCCCAGCCCTTAGCAGGAATCACAATGAGCCACACCACTACTCCTATGGTGACT
TACCCCATTGCTTCCCAGAGCATGCGCATCACAGCCATGCCACACTGA

Translation (435 aa):
MPDRDSYANGTGSSGGGPGGGGSEEASGAGTGSGGATSDAICRDFLRNVCKRGKRCRYRHPDMSEVSNLG
VSKNEFIFCHDFQNKECSRPNCRFIHGSKEDEDGYKKTGELPPRLRQKVAAGLGLSPADLPNGKEEVPIC
RDFLKGDCQRGAKCKFRHLQRDFEFDARGGGGTGGGGSTGSAPPGRRHDLYDIYDLPERGFEDHEPGPKR
RRGGCCPPDGPHFESYECNLAPLRGVECRLLEEENALLRKRVEELKKQVSNLLATNEVLLEQNAQFRNQA
KVMTLSSTAPATEQTLAPTVGTVATFNHGIAQTHTTLSSQALQPRPVSQQELVAPTGAPAAPPTNAAPPA
APPPPPPHLNPEITPLSAALAQTIAQGMAPPPVSMAPVAVSVAPVAPVAVSMAQPLAGITMSHTTTPMVT
YPIASQSMRITAMPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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