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Report for CCDS24172.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24172.2 Public Mus musculus 10 Caps2 23 108 98 CCDS HistoryNCBI Gene:353025Re-query CCDS DB by CCDS ID:24172.2Re-query CCDS DB by GeneID:353025See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 24172.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24172.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170013.1 ENSMUSP00000129887.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170013.1Link to Ensembl Protein Viewer:ENSMUSP00000129887.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170013Re-query CCDS DB by Protein ID:ENSMUSP00000129887
Original member Current member NCBI NM_178278.4 NP_840062.2 Accepted alive Link to Nucleotide Sequence:NM_178278.4Link to Protein Sequence:NP_840062.2Re-query CCDS DB by Nucleotide ID:NM_178278Re-query CCDS DB by Protein ID:NP_840062Link to BLAST:NP_840062.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_840062.2 592 Q8BUG5-3 592 100% 0 0

Chromosomal Locations for CCDS 24172.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 112165706 112165783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112175551 112175600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112177744 112177789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112177883 112178008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112179357 112179515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112182406 112182519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112183005 112183072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112190952 112191071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112194928 112195002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112195708 112195803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112195893 112195986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112199642 112199760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112200682 112200761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112203880 112204034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112208278 112208403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112211097 112211193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112215429 112215604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGATTTAGAGGTAAAAGGAGTGGCTGCCTCAAGAAGCCAGACTCGGCTATTTTCTGGAAGAAAGAATT
CACTGCAACAAGGATGGACTTCTAGATCATGGACAAACCAAAATTCCTGCCTACCTATGGTCCCACCACT
TGATCTGGGAAGCCTTGTTGACTCTGATGAGGAGGATAATTTTTCACAAACAGCACGTGGTACAGTCCAT
GTTCATCTTAACCCACCGCGGTCAGAGCCTGCTCTGGGCTGGGTTCTGCCATGTCAAAGACCTAACAGTC
AGCATCGACTACAGGAAGTGGAACAGGACGTAATACCTGAGGATTTGCCAGCGCCAACAGGCAAATACAG
GCTAAAGTACCAGCAGTACGCAAGTGAAATGAAAGACGGCTACAAGCAGTATATTCAGAGGAGTACAGAG
AAGCCAAAGGCAGCCAGCAGGCCAGAGGCAACCGAGAAGGTGGAAGGAGCCAGTCTGGATGACCTCATGA
CTTTGGATAGGAAGGCCCTCTTACAGCAAGGTTACGCAGATAGCCCTTACGGTAGACAGAGCATCACGAG
GAAATCAGATGTGGAGACTGTGGCTATAGAGAAGAAGAAACAGACCGTTGCAGAGCAGATGATGATGGAC
CACTTATCCAGGGCTGTCATCAGCGACCCAGAACAAGATTTAAACACCAAGAACCAAGAGAGTTCTCGTG
TCCCTCCAGACTCAGAGAGGGCGCCACTTCGCGTCAGGAGACGAACTCTGCATGAAACGAAGATAAGAAC
CAACTCTGCATTAACAGAGAATGACCTTTCTCAGAAAGTAGAATTTGACGGGAGGGTCTTATCAAGAAAT
GGACGCGATGCCTGCCGGGAACTAATTGGGTTTTTCTTTGCCCACGACCAGTCCCTAACTGTGTATGAAT
ATCGGATGTTCGGGAAAAACAGAACAAGTGTGCTTCCTTTTATTAAAAAAGACATTTATCATCATCAGTG
TGGACGAAGAAAAGGAAAGCAATATGAGCTTGGTGACGTCTATACTGGTGCAACTTTGACATTTTTGAGC
TGTGATCAACCTAGCCTTCCAAAGACCATAAAAGAAAATGCATTGCTTAGACTTCGAATTACAAATATTG
ATCAAGTAGCTTTGAATTCTCTGAAAGCTGCCTCTGCGGAACATGGGGAAGAAGAGGCAGTCAGTCCGGA
GGCTCATGATCAGTTGGTGCTACAGGCCATTCAGGATAAATTGAAAGAACAACTGCACAAGAAGGGTGCT
CGTATTTTGACTGGATTGGGAAGATACTTCCAAGGTTTGGACAAGGAAGGGAATGGGCTTTTAGAAAAGG
CAGATTTTCAGCAAGCTCTGAAAACCTTTCACTTGGAAGTGTCTGAACAGGACTTTGAGTCTTTCTGGCT
AATTCTGCAAGGATATGGCCATAGCAAGAACAAGGTTGACTATGGAGAATTCAAACGTGCCATTTTTGGT
GAAATGAATGAATATAGGAAGTCATTTGTTCGCAAGGCCTTCATGCAACTGGATTTTAACAAAACCGGCA
TTGTGTCTGTAATAGACATAAGAAAGTGTTACTGCGCCAAGAAGCATCCACGTGTGATCTCAGGGCATTC
AACAGAGGAGGAAATCAAATCATCTTTCCTAGAGACGTTAAAAGGCACCTGCAGCAAGTGCGATGAAGTT
TCATACGGAGAATTCGAAGATTACTATGAAGGCCTAAGTATAGGGGTAGCAGGCGATGAAGACTTTGTCA
ACATCTTACGTATTCCGTGGAGAATTTAG

Translation (592 aa):
MDLEVKGVAASRSQTRLFSGRKNSLQQGWTSRSWTNQNSCLPMVPPLDLGSLVDSDEEDNFSQTARGTVH
VHLNPPRSEPALGWVLPCQRPNSQHRLQEVEQDVIPEDLPAPTGKYRLKYQQYASEMKDGYKQYIQRSTE
KPKAASRPEATEKVEGASLDDLMTLDRKALLQQGYADSPYGRQSITRKSDVETVAIEKKKQTVAEQMMMD
HLSRAVISDPEQDLNTKNQESSRVPPDSERAPLRVRRRTLHETKIRTNSALTENDLSQKVEFDGRVLSRN
GRDACRELIGFFFAHDQSLTVYEYRMFGKNRTSVLPFIKKDIYHHQCGRRKGKQYELGDVYTGATLTFLS
CDQPSLPKTIKENALLRLRITNIDQVALNSLKAASAEHGEEEAVSPEAHDQLVLQAIQDKLKEQLHKKGA
RILTGLGRYFQGLDKEGNGLLEKADFQQALKTFHLEVSEQDFESFWLILQGYGHSKNKVDYGEFKRAIFG
EMNEYRKSFVRKAFMQLDFNKTGIVSVIDIRKCYCAKKHPRVISGHSTEEEIKSSFLETLKGTCSKCDEV
SYGEFEDYYEGLSIGVAGDEDFVNILRIPWRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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