NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23970.1 Public Mus musculus 10 Slc1a6 23 108 98 CCDS HistoryNCBI Gene:20513Re-query CCDS DB by CCDS ID:23970.1Re-query CCDS DB by GeneID:20513See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005490.9 ENSMUSP00000005490.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005490.9Link to Ensembl Protein Viewer:ENSMUSP00000005490.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000005490Re-query CCDS DB by Protein ID:ENSMUSP00000005490
Original member NCBI NM_009200.3 NP_033226.1 Updated not alive Link to Nucleotide Sequence:NM_009200.3Link to Protein Sequence:NP_033226.1Re-query CCDS DB by Nucleotide ID:NM_009200Re-query CCDS DB by Protein ID:NP_033226
Current member NCBI NM_009200.4 NP_033226.1 Accepted alive Link to Nucleotide Sequence:NM_009200.4Link to Protein Sequence:NP_033226.1Re-query CCDS DB by Nucleotide ID:NM_009200Re-query CCDS DB by Protein ID:NP_033226Link to BLAST:NP_033226.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033226.1 561 O35544 561 100% 0 0

Chromosomal Locations for CCDS 23970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78787769 78787964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78788959 78789096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78791165 78791369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78793290 78793332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78795924 78796267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78800029 78800262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78801802 78801996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78812802 78812936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78814420 78814615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGAGCAGCCACGGCAATAGTCTGTTCCTGAGGGAGAGCGGTGCCGGTGGGGGCTGTCTGCAGGGCCTGC
AGGACAGCCTGCAGCAGAGAGCACTGCGCACGCGCTTGCGCCTGCAGACCATGACCCGAGAGCACGTGAG
GCGCTTCCTGCGCCGGAATGCCTTCATCTTGCTCACAGTCAGCGCTGTGATCATTGGTGTCAGCTTGGCA
TTTGCCTTGCGCCCGTACCAGCTCTCCTACCGCCAGATCAAGTACTTCTCCTTTCCTGGTGAGCTGCTCA
TGAGGATGCTGCAGATGCTGGTGTTACCCCTCATTGTCTCCAGCCTTGTCACAGGTATGGCATCCCTGGA
CAACAAGGCGACAGGGCGGATGGGAATGCGGGCAGCTGTGTACTACATGGTGACTACAGTCATTGCAGTT
TTCATCGGCATCCTAATGGTTACCATCATACATCCTGGGAAGGGCTCCAAGGAGGGGCTGCACCGTGAGG
GCCGAATTGAGACTGTCCCAACAGCTGATGCTTTCATGGACCTGGTCAGAAATATGTTTCCACCTAACCT
TGTGGAGGCCTGCTTCAAACAGTTTAAGACACAGTACAGCACACGAGTGGTGACAAGGACAATTGTAAGG
ACAGACAATGGTTCAGAGCTGGGGGCCTCCATGTCTCCCACATCCTCAGTAGAAAATGAAACCAGCATCC
TGGAAAATGTCACCCGGGCCTTGGGCACCCTGCAGGAGGTGATAAGCTTTGAGGAGACTGTGCCTGTACC
TGGCTCAGCCAATGGCATCAATGCCTTGGGCCTTGTGGTCTTCTCTGTGGCCTTTGGGCTGGTCATTGGT
GGCATGAAGCACAAAGGCCGTGTCCTGAGGGACTTCTTTGACAGCCTCAATGAGGCTATTATGAGGCTGG
TGGGCATCATCATCTGGTATGCACCAGTGGGCATCCTGTTCCTGATTGCTGGAAAGATTCTGGAAATGGA
AGACATGGCTGTCCTTGGAGGTCAGCTGGGCATGTACACACTGACTGTCATCGTTGGCTTATTCCTTCAT
GCTGGTGGTGTGTTGCCCCTTATCTACTTCCTCGTCACCCATCGGAACCCCTTTCCCTTCATTGGTGGTA
TGCTACAGGCACTCATCACAGCTATGGGTACCTCTTCCAGCTCTGCAACTCTGCCTATCACTTTCCGCTG
CCTGGAGGAGGGCCTGGGTGTGGATCGTCGCATCACCAGGTTCGTGCTGCCTGTGGGGGCCACTGTCAAC
ATGGATGGCACTGCACTCTACGAGGCCTTGGCAGCCATCTTTATTGCTCAAGTCAACAACTATGAGCTCA
ACCTTGGTCAGATCACCACAATCAGCATCACAGCCACAGCTGCCAGCGTAGGAGCAGCTGGCATCCCCCA
GGCAGGACTGGTTACCATGGTGATTGTGCTCACATCCGTCGGCCTGCCCACAGAGGACATCACACTGATC
ATAGCTGTGGATTGGTTCCTTGACCGACTTCGTACAATGACCAATGTACTGGGGGATTCGATTGGAGCGG
CTGTCATTGAGCATTTGTCCCAACGGGAGCTGGAGCTGCAGGAGGCTGAGCTGACTCTACCCAGCCTGGG
GAAACCCTATAAGTCACTCATGGCACAAGAAAAGGGGGCATCAAGGGGTCGGGGAGGTAATGAGAGCGTC
ATGTGA

Translation (561 aa):
MSSHGNSLFLRESGAGGGCLQGLQDSLQQRALRTRLRLQTMTREHVRRFLRRNAFILLTVSAVIIGVSLA
FALRPYQLSYRQIKYFSFPGELLMRMLQMLVLPLIVSSLVTGMASLDNKATGRMGMRAAVYYMVTTVIAV
FIGILMVTIIHPGKGSKEGLHREGRIETVPTADAFMDLVRNMFPPNLVEACFKQFKTQYSTRVVTRTIVR
TDNGSELGASMSPTSSVENETSILENVTRALGTLQEVISFEETVPVPGSANGINALGLVVFSVAFGLVIG
GMKHKGRVLRDFFDSLNEAIMRLVGIIIWYAPVGILFLIAGKILEMEDMAVLGGQLGMYTLTVIVGLFLH
AGGVLPLIYFLVTHRNPFPFIGGMLQALITAMGTSSSSATLPITFRCLEEGLGVDRRITRFVLPVGATVN
MDGTALYEALAAIFIAQVNNYELNLGQITTISITATAASVGAAGIPQAGLVTMVIVLTSVGLPTEDITLI
IAVDWFLDRLRTMTNVLGDSIGAAVIEHLSQRELELQEAELTLPSLGKPYKSLMAQEKGASRGRGGNESV
M


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH