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Report for CCDS23960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23960.1 Public Mus musculus 10 Lrrc3 23 108 98 CCDS HistoryNCBI Gene:237387Re-query CCDS DB by CCDS ID:23960.1Re-query CCDS DB by GeneID:237387See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057608.4 ENSMUSP00000059570.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057608.4Link to Ensembl Protein Viewer:ENSMUSP00000059570.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000057608Re-query CCDS DB by Protein ID:ENSMUSP00000059570
Original member Current member NCBI NM_145152.4 NP_660134.1 Accepted alive Link to Nucleotide Sequence:NM_145152.4Link to Protein Sequence:NP_660134.1Re-query CCDS DB by Nucleotide ID:NM_145152Re-query CCDS DB by Protein ID:NP_660134Link to BLAST:NP_660134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660134.1 257 P59034 257 100% 0 0

Chromosomal Locations for CCDS 23960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 77900827 77901600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGGCCCCAGGGGCAGGCAGAGCCCCTCAGCCACACTGGCCCCCTCCCAGGGGTCTTGCTTCTTCATCC
TCTTCTGCTTACGGTTAGGTGCCTCCTGCCCACAGGCCTGCCAGTGCCCTGACCATGCTGGGGCCGTGGC
TGTCCATTGCAGCTCAAGAGGGCTGCAGGAGATCCCTAGGGACATCCCAGCCGACACGGTGCTTCTGAAA
CTAGACGCCAACAGAATCTCCCGAGTCCCCAATGGAGCCTTCCAACACCTGCCTCAGCTGAGGGAGCTGG
ACCTGTCCCATAATGCCATTGAGGCCATTGGGCCAGCAGCCTTCTCAGGTCTGGCTGGGGGCCTGCGGCT
GCTGGACTTATCCCACAATCGCATCCGAAGAATTCCAAAGGACGCCCTGGGCAAGTTGAGTGCCAAGATC
CGCCTGTCCCACAATCCACTGCACTGTGAGTGTGCCCTGCAGGAGGCCCTGTGGGAACTAAAGCTGGACC
CGGACTCCGTGGATGAAATTGCCTGCCACACCTCAGCGCAGGAGCAGTTTGTGGGCAAGCCGCTGATCCA
GGTCCTGGACTCAGGTGCCAGCTTCTGCAGTACCCACCGGAAGACCACCGATGTCGCCATGCTGGTCACC
ATGTTCGGCTGGTTTACCATGGTGATTGCCTACGTAGTGTACTACGTACGCCACAACCAGGAGGATGCCA
GACGACACCTGGAGTACCTGAAGTCCCTGCCTAGTGCTCCAGTCTCCAAGGAGCCTCTTAGCCCTGTGCC
CTAG

Translation (257 aa):
MGPRGRQSPSATLAPSQGSCFFILFCLRLGASCPQACQCPDHAGAVAVHCSSRGLQEIPRDIPADTVLLK
LDANRISRVPNGAFQHLPQLRELDLSHNAIEAIGPAAFSGLAGGLRLLDLSHNRIRRIPKDALGKLSAKI
RLSHNPLHCECALQEALWELKLDPDSVDEIACHTSAQEQFVGKPLIQVLDSGASFCSTHRKTTDVAMLVT
MFGWFTMVIAYVVYYVRHNQEDARRHLEYLKSLPSAPVSKEPLSPVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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