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Report for CCDS23955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23955.1 Public Mus musculus 10 Slx9 23 108 98 CCDS HistoryNCBI Gene:108707Re-query CCDS DB by CCDS ID:23955.1Re-query CCDS DB by GeneID:108707See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045454.8 ENSMUSP00000036382.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045454.8Link to Ensembl Protein Viewer:ENSMUSP00000036382.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045454Re-query CCDS DB by Protein ID:ENSMUSP00000036382
Original member Current member NCBI NM_133998.3 NP_598759.1 Accepted alive Link to Nucleotide Sequence:NM_133998.3Link to Protein Sequence:NP_598759.1Re-query CCDS DB by Nucleotide ID:NM_133998Re-query CCDS DB by Protein ID:NP_598759Link to BLAST:NP_598759.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598759.1 219 P58468 219 100% 0 0

Chromosomal Locations for CCDS 23955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 77488350 77488473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77489998 77490066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77497363 77497513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77503846 77503914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77514306 77514414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77515603 77515740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGGGAAAGTGAGGGCGCTGCGGGCTCGTGTGCACCGGGCGGCCGTGAGACCCGACGGGGATTCTGCAC
CGGGCCCTGTGCCCCGCGCCGTGGAGCCGGCGCTCCCACAATCCCCGGCGGGCGGAGCGGGGGCGAAGGA
CTGGACATTCGTTCACAATGACATCTTTGCCAGGACACAGATAGACCCTAGTGCGTTGGTGCAGAGGCTG
GAGCTGGACCAGAGGAGTGTGGTGTCCCTAAAGAGAGGTGCAGAGCCAAAGGCCATTTTGCCTAAGAAGG
AAAAGCTGAAGCTTCGCCGTGAGCGATGGTTACAGAAAATTGAAGCCATAAAGCTGGCAGAGCAGAAGCT
CAGGGAGGAACGAAAGCGCAAGGCCATGGTGGTGGTAGGCGACCTGCACCCCCTGAGGGATGCCCTACCT
GAGCTGCAGGAACTGGAGGCCGGCCGCCAGCGGCAGCAAGCCAGACGCAGGGTGACCAGCAAGCCCCGGC
CAGTGGAGCTCAGCCGAATGACCACAGTACAGAGGCAGCAGCTTCTTGAAGAAGAAAGGACCCGGTTTCA
GAAGCTGCTGGCCAGCCCAACCTACAGAGCCAGTCCCCTGCTGGCCATCGGGCAGCAGCTGGCACACCAG
ATGCAGCTGGAAGGTGGCAAACAGCTCTGA

Translation (219 aa):
MGKVRALRARVHRAAVRPDGDSAPGPVPRAVEPALPQSPAGGAGAKDWTFVHNDIFARTQIDPSALVQRL
ELDQRSVVSLKRGAEPKAILPKKEKLKLRRERWLQKIEAIKLAEQKLREERKRKAMVVVGDLHPLRDALP
ELQELEAGRQRQQARRRVTSKPRPVELSRMTTVQRQQLLEEERTRFQKLLASPTYRASPLLAIGQQLAHQ
MQLEGGKQL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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