CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23872.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
23872.1	Public	Mus musculus	10	Unc5b	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23872.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000077925.6	ENSMUSP00000077080.5	Accepted	alive
		NCBI	NM_029770.3	NP_084046.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_084046.2	945	Q8K1S3-1	945	100%	0	0

Chromosomal Locations for CCDS 23872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)

Genome Browser links:

Chromosome	Start	Stop
10	60765208	60765373
10	60766980	60767161
10	60768324	60768488
10	60769108	60769257
10	60772178	60772411
10	60772489	60772657
10	60773744	60773831
10	60774353	60774742
10	60774966	60775160
10	60777185	60777217
10	60777390	60777554
10	60778168	60778335
10	60778784	60778964
10	60779668	60779771
10	60780095	60780238
10	60783058	60783282
10	60831087	60831165

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2838 nt):
ATGAGGGCCCGGAGCGGGGTGCGGAGCGCGCTGCTGCTGGCGCTGCTGCTTTGCTGGGATCCGACACCGA GCCTAGCAGGCGTTGACTCTGCTGGCCAGGTGCTCCCAGACTCCTACCCATCAGCCCCTGCGGAGCAGCT GCCGTACTTCCTATTGGAGCCACAGGACGCCTACATCGTAAAGAACAAGCCAGTGGAACTGCACTGCAGA GCCTTCCCTGCCACGCAGATCTACTTCAAGTGTAATGGCGAGTGGGTCAGCCAGAATGACCACGTCACAC AGGAGAGCCTGGATGAGGCCACAGGCTTGCGGGTGCGAGAGGTGCAGATCGAGGTGTCACGGCAGCAAGT GGAGGAACTCTTCGGGCTCGAGGACTACTGGTGCCAGTGCGTGGCCTGGAGCTCTTCGGGAACTACCAAG AGTCGCCGAGCCTACATCCGCATTGCCTACTTGCGCAAGAACTTTGACCAGGAGCCTCTGGCCAAGGAGG TACCCTTGGATCATGAGGTCCTTCTGCAGTGCCGCCCACCGGAGGGAGTGCCTGTGGCTGAGGTGGAATG GCTCAAGAATGAAGATGTCATTGACCCCGCTCAGGACACTAACTTCCTGCTCACCATTGACCACAACCTC ATCATCCGCCAGGCGCGCCTCTCAGACACGGCCAACTACACCTGTGTGGCCAAGAATATCGTGGCCAAGC GCCGGAGCACCACGGCCACAGTCATCGTCTATGTGAATGGAGGCTGGTCCAGCTGGGCAGAGTGGTCACC CTGTTCCAATCGCTGTGGCCGAGGCTGGCAGAAGCGTACTCGGACCTGCACCAATCCAGCCCCACTCAAT GGAGGCGCCTTCTGTGAGGGACAGGCCTTCCAGAAGACAGCTTGCACCACCGTGTGCCCAGTGGATGGAG CGTGGACCGAGTGGAGCAAGTGGTCTGCCTGCAGCACAGAGTGTGCGCACTGGCGCAGCCGCGAGTGCAT GGCACCGCCACCCCAGAACGGAGGCCGTGACTGCAGCGGGACGCTACTTGACTCCAAGAACTGCACTGAT GGGCTGTGCGTGCTGAATCAGAGAACTCTAAACGACCCTAAAAGCCACCCCCTGGAGACATCGGGAGATG TGGCACTGTACGCAGGCCTTGTGGTGGCCGTCTTTGTGGTGGTAGCGGTTCTCATGGCCGTGGGAGTGAT CGTATACCGGAGAAACTGCCGGGACTTCGACACGGACATCACCGACTCCTCTGCGGCCCTCACTGGTGGC TTCCACCCTGTCAACTTCAAGACTGCAAGGCCCAACAACCCGCAGCTCCTGCACCCGTCCGCCCCTCCAG ACCTAACGGCCAGTGCTGGCATCTACCGCGGGCCTGTGTATGCCCTGCAGGACTCCGCCGACAAGATCCC CATGACTAATTCGCCCCTGCTGGATCCCCTGCCCAGCCTCAAGATCAAGGTCTATAACTCCAGCACCATC GGTTCTGGGTCTGGCCTGGCTGATGGAGCCGACCTGCTGGGTGTCCTCCCGCCGGGCACGTACCCAGGCG ATTTCTCCCGGGACACCCATTTCCTGCACCTGCGCAGTGCCAGCCTTGGTTCCCAGCACCTCCTGGGCCT ACCTCGGGACCCCAGCAGCAGTGTCAGCGGCACCTTTGGTTGCCTGGGAGGAAGGCTGAGCCTCCCCGGC ACAGGGGTCAGCCTGTTGGTACCAAATGGAGCCATTCCCCAGGGCAAGTTCTATGACCTGTATCTACATA TCAACAAGGCCGAAAGCACCCTCCCACTTTCAGAAGGTTCCCAGACAGTATTGAGCCCCTCGGTGACCTG TGGGCCCACAGGCCTACTCCTGTGCCGCCCTGTCGTCCTCACCGTGCCCCACTGTGCTGAAGTCATCGCT GGAGACTGGATCTTTCAGCTCAAGACCCAGGCCCATCAGGGCCACTGGGAGGAGGTGGTGACCTTGGATG AGGAGACCCTCAACACACCCTGCTACTGCCAGCTGGAGGCTAAGTCCTGCCACATCCTGCTGGACCAGCT GGGTACCTACGTATTCATGGGCGAGTCCTACTCTCGCTCTGCAGTCAAGCGGCTCCAGCTGGCCATCTTC GCCCCAGCCCTCTGCACCTCCCTGGAGTATAGCCTCAGGGTCTACTGTCTGGAGGACACACCTGTAGCAC TGAAGGAGGTCCTGGAGCTGGAGAGGACTCTGGGTGGCTACTTGGTGGAGGAGCCCAAGCCTTTGCTCTT TAAGGACAGTTACCACAACCTACGCCTCTCCCTCCATGACATCCCCCATGCCCACTGGAGGAGCAAACTA CTGGCCAAGTACCAGGAGATTCCCTTCTACCACGTCTGGAATGGCAGCCAGAGAGCCCTGCACTGCACTT TCACCCTGGAGAGGCATAGCCTGGCCTCCACGGAGTTCACCTGTAAGGTCTGCGTGCGGCAGGTCGAAGG GGAAGGCCAGATTTTCCAGCTGCACACAACGTTGGCCGAGACGCCTGCTGGCTCCCTGGATGCTCTCTGC TCTGCCCCGGGCAATGCCATCACCACCCAGCTGGGACCCTATGCCTTCAAGATACCCCTGTCCATCCGCC AAAAGATCTGCAGCAGCCTGGACGCCCCCAACTCCCGGGGCAACGACTGGAGGCTGTTGGCGCAGAAGCT GTCCATGGACCGGTACCTAAACTACTTCGCCACCAAAGCTAGTCCCACAGGTGTCATCTTAGACCTCTGG GAAGCTCGGCAACAGGATGACGGGGACCTCAACAGCCTGGCCAGTGCCTTGGAGGAGATGGGCAAGAGTG AGATGCTGGTAGCCATGGCCACAGATGGCGATTGCTGA
Translation (945 aa):
MRARSGVRSALLLALLLCWDPTPSLAGVDSAGQVLPDSYPSAPAEQLPYFLLEPQDAYIVKNKPVELHCR AFPATQIYFKCNGEWVSQNDHVTQESLDEATGLRVREVQIEVSRQQVEELFGLEDYWCQCVAWSSSGTTK SRRAYIRIAYLRKNFDQEPLAKEVPLDHEVLLQCRPPEGVPVAEVEWLKNEDVIDPAQDTNFLLTIDHNL IIRQARLSDTANYTCVAKNIVAKRRSTTATVIVYVNGGWSSWAEWSPCSNRCGRGWQKRTRTCTNPAPLN GGAFCEGQAFQKTACTTVCPVDGAWTEWSKWSACSTECAHWRSRECMAPPPQNGGRDCSGTLLDSKNCTD GLCVLNQRTLNDPKSHPLETSGDVALYAGLVVAVFVVVAVLMAVGVIVYRRNCRDFDTDITDSSAALTGG FHPVNFKTARPNNPQLLHPSAPPDLTASAGIYRGPVYALQDSADKIPMTNSPLLDPLPSLKIKVYNSSTI GSGSGLADGADLLGVLPPGTYPGDFSRDTHFLHLRSASLGSQHLLGLPRDPSSSVSGTFGCLGGRLSLPG TGVSLLVPNGAIPQGKFYDLYLHINKAESTLPLSEGSQTVLSPSVTCGPTGLLLCRPVVLTVPHCAEVIA GDWIFQLKTQAHQGHWEEVVTLDEETLNTPCYCQLEAKSCHILLDQLGTYVFMGESYSRSAVKRLQLAIF APALCTSLEYSLRVYCLEDTPVALKEVLELERTLGGYLVEEPKPLLFKDSYHNLRLSLHDIPHAHWRSKL LAKYQEIPFYHVWNGSQRALHCTFTLERHSLASTEFTCKVCVRQVEGEGQIFQLHTTLAETPAGSLDALC SAPGNAITTQLGPYAFKIPLSIRQKICSSLDAPNSRGNDWRLLAQKLSMDRYLNYFATKASPTGVILDLW EARQQDDGDLNSLASALEEMGKSEMLVAMATDGDC

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH