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Report for CCDS23863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23863.1 Public Mus musculus 10 P4ha1 23 108 98 CCDS HistoryNCBI Gene:18451Re-query CCDS DB by CCDS ID:23863.1Re-query CCDS DB by GeneID:18451See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009789.14 ENSMUSP00000009789.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009789.14Link to Ensembl Protein Viewer:ENSMUSP00000009789.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000009789Re-query CCDS DB by Protein ID:ENSMUSP00000009789
Original member NCBI NM_011030.2 NP_035160.1 Updated not alive Link to Nucleotide Sequence:NM_011030.2Link to Protein Sequence:NP_035160.1Re-query CCDS DB by Nucleotide ID:NM_011030Re-query CCDS DB by Protein ID:NP_035160
Current member NCBI NM_011030.3 NP_035160.1 Accepted alive Link to Nucleotide Sequence:NM_011030.3Link to Protein Sequence:NP_035160.1Re-query CCDS DB by Nucleotide ID:NM_011030Re-query CCDS DB by Protein ID:NP_035160Link to BLAST:NP_035160.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035160.1 534 Q60715-1 534 100% 0 0

Chromosomal Locations for CCDS 23863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59337081 59337156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59339296 59339392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59342684 59342835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59343657 59343794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59348181 59348420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59350404 59350600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59352083 59352259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59354340 59354410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59361861 59361960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59365289 59365342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59367289 59367354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59369241 59369309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59369587 59369683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59371004 59371074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGATCTGGGTTGTTTTAATGATGGCGATTCTACTTCCTCAGTCTTTAGCCCATCCAGGGTTTTTTACGT
CAATTGGTCAGATGACTGACTTGATCCATAATGAGAAAGACCTGGTGACATCACTAAAAGATTATATTAA
AGCAGAAGAGGACAAGTTAGAGCAAATCAAAAAATGGGCAGAGAAGTTAGACCGGCTAACGAGTACAGCA
ACAAAAGACCCAGAGGGGTTTGTTGGGCATCCTGTAAACGCATTCAAGTTAATGAAACGTCTGAACACTG
AGTGGAGTGAGTTGGAGAATCTGATCCTCAAGGACATGTCGGATGGCTTCATCTCTAACCTAACCATTCA
GAGGCAGTACTTCCCTAATGATGAAGATCAGGTTGGAGCTGCTAAAGCTCTGTTTCGGCTGCAAGACACC
TACAATCTGGACACAAATACCATCTCAAAGGGGAATCTTCCAGGAGTGCAACATAAGTCTTTCCTGACAG
CCGAGGACTGCTTTGAGCTGGGCAAAGTGGCCTATACAGAGGCAGATTATTACCACACAGAACTGTGGAT
GGAGCAGGCTCTGACGCAGCTGGAGGAGGGAGAGCTGTCTACTGTAGATAAAGTCTCTGTTCTGGATTAC
CTGAGCTATGCGGTGTACCAGCAGGGAGACCTGGATAAGGCGCTTCTCCTCACCAAGAAGCTTCTTGAGC
TAGATCCTGAACATCAGAGAGCTAATGGTAACTTAGTATATTTTGAATATATAATGAGTAAAGAAAAAGA
TGCCAATAAGTCAGCGTCGGGCGACCAATCTGATCAGAAAACTGCACCAAAGAAAAAAGGGATAGCTGTG
GATTACCTGCCAGAGAGACAGAAGTACGAAATGCTGTGCCGTGGGGAGGGTATCAAAATGACTCCCCGGA
GACAGAAAAGACTGTTCTGCCGCTACCATGATGGGAACCGGAATCCTAAGTTCATCCTGGCCCCAGCCAA
GCAGGAGGACGAGTGGGACAAGCCCCGGATTATCCGTTTCCATGACATCATCTCTGACGCGGAGATTGAG
ATTGTCAAAGACTTAGCAAAACCAAGGCTGAGGCGAGCCACCATTTCAAACCCAGTAACAGGAGCCTTGG
AGACGGTACATTACAGAATTAGCAAAAGTGCTTGGCTGTCTGGCTACGAAGACCCTGTGGTATCCCGAAT
TAATATGAGAATACAAGATCTCACAGGACTGGATGTTTCTACGGCCGAGGAGTTACAGGTAGCAAATTAC
GGAGTTGGAGGACAGTATGAGCCCCATTTTGACTTTGCAAGGAAAGATGAGCCGGATGCCTTTAGAGAGC
TTGGGACAGGAAATAGGATTGCCACGTGGCTGTTCTATATGAGCGATGTGTCTGCTGGAGGAGCTACTGT
TTTTCCTGAAGTGGGAGCCAGTGTTTGGCCCAAAAAAGGCACTGCTGTCTTCTGGTATAATCTGTTTGCC
AGTGGGGAAGGAGATTACAGTACACGGCATGCAGCCTGTCCCGTGCTAGTTGGAAACAAATGGGTATCCA
ACAAATGGCTCCATGAACGTGGACAAGAATTTCGAAGGCCGTGCACCCTGTCAGAATTGGAATGA

Translation (534 aa):
MIWVVLMMAILLPQSLAHPGFFTSIGQMTDLIHNEKDLVTSLKDYIKAEEDKLEQIKKWAEKLDRLTSTA
TKDPEGFVGHPVNAFKLMKRLNTEWSELENLILKDMSDGFISNLTIQRQYFPNDEDQVGAAKALFRLQDT
YNLDTNTISKGNLPGVQHKSFLTAEDCFELGKVAYTEADYYHTELWMEQALTQLEEGELSTVDKVSVLDY
LSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLVYFEYIMSKEKDANKSASGDQSDQKTAPKKKGIAV
DYLPERQKYEMLCRGEGIKMTPRRQKRLFCRYHDGNRNPKFILAPAKQEDEWDKPRIIRFHDIISDAEIE
IVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANY
GVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYNLFA
SGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRPCTLSELE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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