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Report for CCDS23834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23834.1 Public Mus musculus 10 Gprc6a 23 108 98 CCDS HistoryNCBI Gene:210198Re-query CCDS DB by CCDS ID:23834.1Re-query CCDS DB by GeneID:210198See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020062.3 ENSMUSP00000020062.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020062.3Link to Ensembl Protein Viewer:ENSMUSP00000020062.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020062Re-query CCDS DB by Protein ID:ENSMUSP00000020062
Original member Current member NCBI NM_153071.1 NP_694711.1 Accepted alive Link to Nucleotide Sequence:NM_153071.1Link to Protein Sequence:NP_694711.1Re-query CCDS DB by Nucleotide ID:NM_153071Re-query CCDS DB by Protein ID:NP_694711Link to BLAST:NP_694711.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694711.1 928 Q8K4Z6-1 928 100% 0 0

Chromosomal Locations for CCDS 23834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 51614865 51615979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51616583 51616706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51620898 51621110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51626431 51627267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51628249 51628552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51631238 51631431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2787 nt):
ATGGCCCTATTGATTACAGTAGTTACTTGCTTCATGATTATTCTTGATACCTCCCAGTCTTGTCATACCC
CAGATGACTTCGTGGCTATCACTTCTCCTGGACATATCATGATTGGTGGCTTGTTTGCCATTCATGAAAA
AATGTTGTCCTCAGATGACCATCCCAGACGACCACAAATCCAGAAATGTGCTGGCTTTGAAATATCAGTG
TTTCTTCAAACTCTGGCTATGATACACAGCATTGAGATGATCAATAATTCAACACTGTTATCCGGAGTCA
AGCTGGGATATGAAATCTATGACACTTGTACCGAAGTCACAGCAGCAATGGCTGCCACTCTGAGGTTCCT
CTCAAAATTCAACTGCTCTAGAGAAACTGTGGTCTTTCAGTGTGACTATTCCAGCTACATGCCAAGGGTC
AAGGCTGTCATAGGTGCTGGCTACTCTGAAACATCCATCGCGGTCTCAAGGATGCTGAACTTACAGCTCA
TGCCACAGGTGAGTTATGAATCCACTGCAGAAATCCTGAGTGACAAGATCCGCTTTCCTTCATTTTTACG
GACTGTGCCTAGTGACTTCTACCAAACTAAAGCAATGGCCCACCTGATCCGACAATCGGGATGGAACTGG
ATTGGTGCCATAACAACCGATGATGATTATGGAAGACTAGCTCTCAACACATTTGCAATACAGGCTGCTG
AAAACAATGTGTGCATTGCCTTCAAAGAGGTTCTGCCAGCCTTCCTCTCAGATAATACCATTGAAGTGAG
AATTAACCAGACTCTGGAGAAGATCATTGCAGAAGCCCAGGTTAATGTCATTGTGGTGTTTCTGAGAAAA
TTCCATGTTTTCAATCTCTTCACGAAAGCCATTGAAAGGAAAATAAGTAAGATCTGGATTGCTAGTGATA
ATTGGTCAACCGCTACCAAGATTATCACCATCCCTAATGTTAAGAAGCTTGGCAAAGTGGTGGGGTTTGC
CTTTAGGAGAGGAAATACGTCTTCTTTCCATTCTTTTCTTCAAACTCTGCATATGTACCCCAATGACAAT
AACAAACCCCTACATGAATTTGCCATGCTCGTTTCTGCCTGTAAATACATCAAAGACGGTGATTTGAGCC
AATGCATATCCAACTATTCTCAGGCAACTTTGACCTATGACACTACCAAGACCATTGAAAACCACTTATT
CAAGAGAAATGATTTCCTCTGGCATTATACTGAGCCGGGACTCATTTATAGCATTCAGCTTGCAGTGTTC
GCCCTTGGTCATGCCATCCGGGATCTGTGCCAAGCTCGAGACTGCAAGAAACCCAACGCCTTTCAGCCAT
GGGAGCTACTTGCCGTGCTGAAAAACGTGACATTCACTGATGGAAGGAATTCATTTCACTTTGATGCCCA
CGGGGATTTAAATACTGGTTATGACGTGGTGCTCTGGAAGGAGACCAATGGCCTCATGACTGTCACAAAG
ATGGCAGAATATGACCTGCAGCGTGACGTCTTCATCACCACAAACCAAGAAACAAAACATGAATTCAGGA
AACTTAAGCAAATTCTATCTAAATGCTCCAAGGAATGCAGCCCTGGTCAAATGAAGAAAGCCACAGGAAG
CCAACACAGCTGTTGCTATGAATGTGTGAGCTGCCCAGAAAACCACTACAGTAATGAGACAGATATGGAT
CACTGCCTTTTATGCAACAATGAAACCCACTGGGCCCCAGTAAGGAGCACTACCTGCTTTGAAAAGGAAG
TGGAGTATCTGGACTGGGATGACTCCTTGGCTCTCCTCCTCATTGCCCTCTCCCTACTTGGAATCGCCTT
TGTTCTGGCCATTGGCATAATATTTACAAGAAACCTGAAGACACCTGTCGTGAAATCATCTGGAGGATTA
GTGGTCTGCTACGTGATGCTCATCTGCCACGCCCTTAACTTTGCCAGCACAGGCTTTTTTATTGGAGAAC
CACAAGACTTTGCGTGCAAGACCAGGCAGACCTTATTTGGTGTGAGCTTTACTCTCTGTGTCTCCTGTAT
TTTGACCAAGTCCCTGAAAATTTTGCTAGCTTTCAGTTTTGACCCCAAGCTGACAATGTTCCTGAAGTGC
CTTTATAGGCCTGTTCCCATTGTTCTTACCTGCACGGGCATTCAAGTGGTCATTTGCACTCTTTGGCTGG
TGCTGGCAGCACCTAGTGTGGAAGAGAATATCTCCTTGCCTAGAGTCATTATCCTGGAATGTGAGGAGGG
GTCAGCACTGGCATTTGGTACCATGCTGGGCTACATCACAGTTCTGGCCTTCATTTGCTTTGTATTTGCA
TTCAAGGGGAGGAAACTTCCTGAGAATTACAACGAAGCCAAGTTCCTGACCTTTGGGATGCTGATTTACT
TCATAGCTTGGATCACATTCATCCCTGTCTATACTACCACATTCGGCAAGTATTTGCCCGCCGTGGAGAT
TATAGTCATTCTGATATCCAATTATGGGATTCTCTGCTGTATATTCTTCCCCAAGTGCTACATTATTCTT
TGCAAGCAGAAGACTAACACCAAATCAGCCTTCCTCCAGATGGTTTACAACTACTCTGCTCACAGTGTGG
ACAGCCTTGCCTTGAGTCATGTTTCCCTGGACTCCACCAGCTACGATACTGCAACAACCAATCAGAGCCC
TGGTAACAAGATGACAGCCTGTCAGAACGACAACCATCTTCCTGCACAAGTGCTCCCACACACAGGCACG
GCAAAGACTATCAAAGCGTCTAAAACTTTGCGTCAGAAAAGAAGTTCAAGTATATGA

Translation (928 aa):
MALLITVVTCFMIILDTSQSCHTPDDFVAITSPGHIMIGGLFAIHEKMLSSDDHPRRPQIQKCAGFEISV
FLQTLAMIHSIEMINNSTLLSGVKLGYEIYDTCTEVTAAMAATLRFLSKFNCSRETVVFQCDYSSYMPRV
KAVIGAGYSETSIAVSRMLNLQLMPQVSYESTAEILSDKIRFPSFLRTVPSDFYQTKAMAHLIRQSGWNW
IGAITTDDDYGRLALNTFAIQAAENNVCIAFKEVLPAFLSDNTIEVRINQTLEKIIAEAQVNVIVVFLRK
FHVFNLFTKAIERKISKIWIASDNWSTATKIITIPNVKKLGKVVGFAFRRGNTSSFHSFLQTLHMYPNDN
NKPLHEFAMLVSACKYIKDGDLSQCISNYSQATLTYDTTKTIENHLFKRNDFLWHYTEPGLIYSIQLAVF
ALGHAIRDLCQARDCKKPNAFQPWELLAVLKNVTFTDGRNSFHFDAHGDLNTGYDVVLWKETNGLMTVTK
MAEYDLQRDVFITTNQETKHEFRKLKQILSKCSKECSPGQMKKATGSQHSCCYECVSCPENHYSNETDMD
HCLLCNNETHWAPVRSTTCFEKEVEYLDWDDSLALLLIALSLLGIAFVLAIGIIFTRNLKTPVVKSSGGL
VVCYVMLICHALNFASTGFFIGEPQDFACKTRQTLFGVSFTLCVSCILTKSLKILLAFSFDPKLTMFLKC
LYRPVPIVLTCTGIQVVICTLWLVLAAPSVEENISLPRVIILECEEGSALAFGTMLGYITVLAFICFVFA
FKGRKLPENYNEAKFLTFGMLIYFIAWITFIPVYTTTFGKYLPAVEIIVILISNYGILCCIFFPKCYIIL
CKQKTNTKSAFLQMVYNYSAHSVDSLALSHVSLDSTSYDTATTNQSPGNKMTACQNDNHLPAQVLPHTGT
AKTIKASKTLRQKRSSSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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