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Report for CCDS23715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23715.1 Public Mus musculus 10 Tnfaip3 23 108 98 CCDS HistoryNCBI Gene:21929Re-query CCDS DB by CCDS ID:23715.1Re-query CCDS DB by GeneID:21929See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019997.10 ENSMUSP00000019997.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019997.10Link to Ensembl Protein Viewer:ENSMUSP00000019997.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019997Re-query CCDS DB by Protein ID:ENSMUSP00000019997
Original member Current member EBI ENSMUST00000105527.1 ENSMUSP00000101167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105527.1Link to Ensembl Protein Viewer:ENSMUSP00000101167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105527Re-query CCDS DB by Protein ID:ENSMUSP00000101167
Original member NCBI NM_009397.3 NP_033423.3 Updated not alive Link to Nucleotide Sequence:NM_009397.3Link to Protein Sequence:NP_033423.3Re-query CCDS DB by Nucleotide ID:NM_009397Re-query CCDS DB by Protein ID:NP_033423
Current member NCBI NM_009397.4 NP_033423.3 Accepted alive Link to Nucleotide Sequence:NM_009397.4Link to Protein Sequence:NP_033423.3Re-query CCDS DB by Nucleotide ID:NM_009397Re-query CCDS DB by Protein ID:NP_033423Link to BLAST:NP_033423.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033423.3 775 Q60769 775 100% 0 0

Chromosomal Locations for CCDS 23715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 19002731 19003015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19003576 19003757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19004457 19005331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19005551 19005731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19006863 19007033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19007182 19007329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19008145 19008335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 19011481 19011775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2328 nt):
ATGGCTGAACAACTTCTTCCTCAGGCTTTGTATTTGAGCAATATGCGGAAAGCTGTGAAGATACGAGAGA
GAACCCCAGAAGACATTTTCAAACCTACCAATGGGATCATCTATCACTTTAAAACCATGCACCGATACAC
GCTGGAGATGTTCAGAACATGCCAGTTTTGCCCACAGTTCCGAGAGATCATCCACAAAGCACTTATTGAC
AGAAGTGTCCAGGCTTCCCTGGAAAGCCAGAAGAAGCTCAACTGGTGTCGTGAAGTCAGGAAGCTCGTGG
CTCTGAAAACCAATGGTGATGGAAACTGCCTCATGCATGCAGCTTGTCAGTACATGTGGGGTGTTCAGGA
TACTGACCTGGTCCTGAGGAAGGCCCTCTGCAGCACCCTTAAGGAGACAGACACTCGGAACTTTAAATTC
CGCTGGCAGCTGGAATCTCTGAAATCTCAGGAATTTGTGGAAACAGGACTTTGCTACGACACTCGGAACT
GGAATGACGAATGGGACAACTTGGTCAAAATGGCATCAGCAGACACACCTGCAGCCCGAAGTGGACTTCA
GTACAATTCCCTGGAAGAAATCCACATATTTGTCCTCAGCAACATCCTCAGAAGACCCATCATTGTCATT
TCAGACAAAATGCTAAGAAGTTTGGAATCTGGTTCCAATTTTGCTCCTTTGAAAGTGGGTGGGATTTATC
TGCCTCTTCACTGGCCTGCCCAGGAGTGTTACAGATATCCCATCGTCCTAGGCTATGACAGCCAGCACTT
TGTACCCCTGGTGACCCTGAAGGACAGTGGACCTGAACTTCGCGCTGTTCCACTTGTTAACAGAGACCGG
GGTAGGTTTGAAGACTTAAAAGTTCACTTCTTGACAGATCCTGAGAATGAGATGAAGGAAAAGCTTCTAA
AGGAGTACTTGATAGTGATGGAGATCCCTGTGCAAGGCTGGGACCACGGCACGACTCACCTGATCAACGC
TGCAAAATTGGATGAAGCTAACTTACCCAAAGAAATAAATTTGGTAGACGATTACTTTGAGCTTGTTCAG
CACGAATACAAGAAATGGCAGGAGAACAGCGATCAGGCCAGGAGAGCGGCACATGCGCAGAACCCCTTGG
AGCCTTCCACACCCCAGCTATCACTCATGGATATAAAATGTGAGACACCCAACTGTCCTTTCTTCATGTC
CGTGAACACTCAGCCTTTATGCCACGAATGCTCAGAGAGGCGCCAAAAGAATCAGAGCAAGCTCCCAAAG
CTGAACTCGAAGCTAGGCCCTGAAGGACTCCCAGGCGTGGGACTTGGCTCCTCAAACTGGAGCCCCGAGG
AAACCGCTGGAGGACCTCATTCAGCCCCACCCACAGCACCCAGCCTTTTTCTCTTCAGTGAGACCACTGC
AATGAAGTGCAGGAGTCCTGGGTGCCCTTTTACTTTGAATGTGCAGCATAATGGATTCTGTGAGCGTTGC
CACGCCCGGCAGATTAATGCCAGCCACACCGCAGACCCTGGAAAGTGCCAAGCCTGCCTTCAGGATGTCA
CTCGGACCTTTAATGGCATCTGCAGTACCTGTTTCAAAAGGACTACAGCAGAGCCCAGCTCCAGCCTCAC
TTCCAGTATCCCTGCCTCCTGTCACCAACGCTCCAAGTCTGACCCCTCACAACTCATCCAAAGTCTCACT
CCACACTCTTGCCACCGGACTGGAAATGTCTCTCCTTCTGGCTGCCTCTCCCAGGCTGCACGGACTCCAG
GAGACAGAGCAGGGACAAGCAAGTGCAGGAAAGCTGGCTGCATGTATTTTGGGACTCCAGAAAACAAGGG
CTTTTGCACTCTATGTTTCATCGAATACAGAGAAAATAAGCAGTCTGTTACTGCCTCTGAGAAAGCTGGT
TCCCCGGCCCCCAGGTTCCAGAACAATGTCCCGTGCCTGGGCAGGGAGTGCGGCACACTCGGAAGCACCA
TGTTTGAAGGGTACTGTCAGAAGTGTTTCATCGAAGCTCAGAACCAGAGATTCCATGAAGCAAGAAGAAC
GGAAGAACAGCTGAGATCAAGCCAGCATAGAGACATGCCTCGAACTACACAGGTAGCCTCAAGGCTGAAA
TGTGCCCGGGCCTCCTGCAAGAACATTCTGGCCTGTCGCAGTGAGGAACTCTGTATGGAGTGCCAGCACC
TAAGCCAACGAGTAGGTTCTGTGGCCCACCGGGGTGAGCCCACGCCTGAAGAGCCCCCTAAACAGCGCTG
CCGGGCCCCTGCTTGTGATCACTTTGGCAATGCCAAGTGTAATGGTTACTGCAATGAGTGCTACCAGTTC
AAGCAGATGTATGGCTAA

Translation (775 aa):
MAEQLLPQALYLSNMRKAVKIRERTPEDIFKPTNGIIYHFKTMHRYTLEMFRTCQFCPQFREIIHKALID
RSVQASLESQKKLNWCREVRKLVALKTNGDGNCLMHAACQYMWGVQDTDLVLRKALCSTLKETDTRNFKF
RWQLESLKSQEFVETGLCYDTRNWNDEWDNLVKMASADTPAARSGLQYNSLEEIHIFVLSNILRRPIIVI
SDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSQHFVPLVTLKDSGPELRAVPLVNRDR
GRFEDLKVHFLTDPENEMKEKLLKEYLIVMEIPVQGWDHGTTHLINAAKLDEANLPKEINLVDDYFELVQ
HEYKKWQENSDQARRAAHAQNPLEPSTPQLSLMDIKCETPNCPFFMSVNTQPLCHECSERRQKNQSKLPK
LNSKLGPEGLPGVGLGSSNWSPEETAGGPHSAPPTAPSLFLFSETTAMKCRSPGCPFTLNVQHNGFCERC
HARQINASHTADPGKCQACLQDVTRTFNGICSTCFKRTTAEPSSSLTSSIPASCHQRSKSDPSQLIQSLT
PHSCHRTGNVSPSGCLSQAARTPGDRAGTSKCRKAGCMYFGTPENKGFCTLCFIEYRENKQSVTASEKAG
SPAPRFQNNVPCLGRECGTLGSTMFEGYCQKCFIEAQNQRFHEARRTEEQLRSSQHRDMPRTTQVASRLK
CARASCKNILACRSEELCMECQHLSQRVGSVAHRGEPTPEEPPKQRCRAPACDHFGNAKCNGYCNECYQF
KQMYG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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