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Report for CCDS23634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23634.1 Public Mus musculus 9 Sec22c 23 108 98 CCDS HistoryNCBI Gene:215474Re-query CCDS DB by CCDS ID:23634.1Re-query CCDS DB by GeneID:215474See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23634.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078547.11 ENSMUSP00000077628.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078547.11Link to Ensembl Protein Viewer:ENSMUSP00000077628.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078547Re-query CCDS DB by Protein ID:ENSMUSP00000077628
Original member Current member EBI ENSMUST00000111560.9 ENSMUSP00000107185.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111560.9Link to Ensembl Protein Viewer:ENSMUSP00000107185.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111560Re-query CCDS DB by Protein ID:ENSMUSP00000107185
Original member Current member NCBI NM_001164562.1 NP_001158034.1 Accepted alive Link to Nucleotide Sequence:NM_001164562.1Link to Protein Sequence:NP_001158034.1Re-query CCDS DB by Nucleotide ID:NM_001164562Re-query CCDS DB by Protein ID:NP_001158034Link to BLAST:NP_001158034.1
Original member Current member NCBI NM_178677.4 NP_848792.2 Accepted alive Link to Nucleotide Sequence:NM_178677.4Link to Protein Sequence:NP_848792.2Re-query CCDS DB by Nucleotide ID:NM_178677Re-query CCDS DB by Protein ID:NP_848792Link to BLAST:NP_848792.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158034.1 303 Q8BXT9 303 100% 0 0
NP_848792.2 303 Q8BXT9 303 100% 0 0

Chromosomal Locations for CCDS 23634.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121684658 121684858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121685523 121685588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121688199 121688317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121690236 121690415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121692910 121693073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121695534 121695715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGTCCATGATCCTTTTTGCCAGCATCGTACGGGTGAGGGATGGACTGCCCCTCTCAGCCTCCACTGACT
TTTACTACGCCCAGGAGTTTCTGGAATGCAGGAGGCAGCTCAAGACCTTAGCCCAGAGGCTGGCCCGGCA
TCCAGGCCGAGGCTGTGCGGAAAGTTGTGACTTCCTTATCTATTTTTCATCATCGGGGGACGTGGCCTGC
ATGGCCATCTGCTCGCGCCAGTGCCCGGCAGCCATGGCCTTCTGCTTCTTGGAGGCTCTGTGGTGGGACT
TCATAGCTTCCTACGACACCACCTGCGTTGGCCTGGCCTCCCGGCCTTACGCCTTTCTTGAGTTTGACAG
TGTCATTCAGAAAACAAAGTGGCATTTTAACCACATGAGCTCCTCCCAGATGAAGAGTGGCTTAGAAAAG
ATCCAAGAGGAGCTCGAGTTCCAGCCTCCAGCAGTCCTGTCCCTAGAGGACACAGATGTGGCAAATGGCA
TGCTGAACGGCCACACCCCAGTGCACTCTGAGCCTGCTCCGAACCTCCGGATGAAGCCGGTGACAGCCCT
GGGTGTCCTCTCCCTTGTTCTCAACATCATGTGCGCGGCCCTGAACCTCATCCGTGGAGTTCACCTCGCA
GAGCATTCTTTACAGGTTGCCCAAGAGGAAGTTGGAAACATCCTGGCTTTCTTTATTCCTTCTGTGGCCT
GCATCGTCCAGTGTTATCTGTACCTGTTCTACAGTCCAGCCCGGACGCTGAAGGTGCTGCTGATGCTGGC
CTCCATCTGCCTGGGCAATGCGTACCTGCACGGGCTGAGGAACACCTGGCAAATCCTCTTCCACGTAGGA
GTGGCTTTTCTGTCTTCATATCAGATCCTGACCAGACAGCTGCAGGAGAGGCAATCTGACTATGGAGTGT
GA

Translation (303 aa):
MSMILFASIVRVRDGLPLSASTDFYYAQEFLECRRQLKTLAQRLARHPGRGCAESCDFLIYFSSSGDVAC
MAICSRQCPAAMAFCFLEALWWDFIASYDTTCVGLASRPYAFLEFDSVIQKTKWHFNHMSSSQMKSGLEK
IQEELEFQPPAVLSLEDTDVANGMLNGHTPVHSEPAPNLRMKPVTALGVLSLVLNIMCAALNLIRGVHLA
EHSLQVAQEEVGNILAFFIPSVACIVQCYLYLFYSPARTLKVLLMLASICLGNAYLHGLRNTWQILFHVG
VAFLSSYQILTRQLQERQSDYGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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