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Report for CCDS23603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23603.1 Public Mus musculus 9 Eomes 23 108 98 CCDS HistoryNCBI Gene:13813Re-query CCDS DB by CCDS ID:23603.1Re-query CCDS DB by GeneID:13813See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23603.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035020.14 ENSMUSP00000035020.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035020.14Link to Ensembl Protein Viewer:ENSMUSP00000035020.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035020Re-query CCDS DB by Protein ID:ENSMUSP00000035020
Original member NCBI NM_010136.3 NP_034266.2 Updated not alive Link to Nucleotide Sequence:NM_010136.3Link to Protein Sequence:NP_034266.2Re-query CCDS DB by Nucleotide ID:NM_010136Re-query CCDS DB by Protein ID:NP_034266
Current member NCBI NM_010136.4 NP_034266.2 Accepted alive Link to Nucleotide Sequence:NM_010136.4Link to Protein Sequence:NP_034266.2Re-query CCDS DB by Nucleotide ID:NM_010136Re-query CCDS DB by Protein ID:NP_034266Link to BLAST:NP_034266.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034266.2 707 O54839-1 707 100% 0 0

Chromosomal Locations for CCDS 23603.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 118478660 118479546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118480467 118480621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118481265 118481386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118481989 118482147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118482233 118482294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118484274 118485012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGCAGTTGGGAGAGCAGCTCCTGGTGAGCTCGGTGAACCTGCCCGGCGCGCACTTCTACTCGCTGGAGA
GTGCTCGCGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAGGGGGAGGCGGAGGGAGCGTCAGCCTCCTCCC
CGGTGCTGCCCCCTCGCCCCAGAGGCTGGACTTAGACAAAGCGTCCAAGAAGTTTCCGGGCAGTCTCCCG
TGCCAGGCGGGGAGCGCAGAACCCGCAGGCGCCGGCGCGGGGGCCCCCGCGGCCATGCTCAGTGACGCGG
ACGCTGGGGACACCTTCGGGAGCACCTCGGCGGTGGCCAAGCCCGGGCCCCCGGACGGCCGCAAGGGCTC
CCCGTGCGCGGAGGAGGAGCTGCCCTCCGCCGCCACCGCCGCGGCCACCGCGCGCTACTCCATGGACAGC
CTGAGCTCCGAGCGCTACTACCTCCCGTCGCCGGGACCGCAGGGCTCCGAGCTCGCCGCGCCCTGCTCGC
TCTTCCAGTACCCGGCGGCGGCCGGAGCAGCCCACGGACCCGTGTACCCCGCGTCCAATGGCGCGCGCTA
CCCCTACGGCTCCATGCTGCCCCCCGGTGGATTCCCCGCCGCCGTGTGCCCGCCCGCGAGGGCGCAGTTC
GGCCCCGCTGCGGGTTCGGGGAGCGGCGCTGGTAGCAGCGGCGGTGGTGCCGGCGGTCCTGGCGCCTATC
CCTACGGCCAGGGTTCTCCGCTCTACGGGCCATACGCCGGAACCTCAGCGGCCGGGTCTTGTGGAGGATT
GGGGGGCCTAGGGGTGCCTGGCTCCGGCTTCCGCGCCCACGTCTACCTGTGCAACCGGCCCCTATGGCTC
AAATTCCACCGGCACCAAACTGAGATGATCATCACCAAACAGGGCAGGCGCATGTTTCCTTTCTTGAGCT
TCAACATAAACGGACTCAACCCCACCGCCCACTACAATGTTTTCGTGGAAGTGGTTCTGGCCGACCCTAA
CCACTGGCGCTTCCAGGGGGGCAAGTGGGTGACCTGCGGCAAAGCGGACAATAACATGCAGGGCAATAAG
ATGTACGTTCACCCAGAATCTCCTAACACTGGCTCCCACTGGATGAGGCAGGAGATTTCCTTTGGGAAGT
TAAAACTCACCAATAACAAAGGTGCAAACAACAACAACACACAGATGATAGTGTTGCAGTCTCTGCACAA
ATACCAACCGAGGCTGCACATCGTGGAAGTGACAGAGGACGGTGTGGAGGACTTGAATGAACCTTCCAAG
ACTCAGACCTTCACCTTCTCAGAGACACAGTTCATCGCTGTGACGGCCTACCAAAACACGGATATCACCC
AGCTAAAGATCGACCATAACCCCTTCGCCAAAGGCTTCCGGGACAACTACGATTCCATGTACACGGCTTC
AGAAAATGACAGGTTAACTCCATCTCCCACGGATTCCCCTAGATCCCATCAGATTGTCCCTGGAGGTCGG
TACGGCGTTCAAAACTTCTTCCCGGAGCCCTTTGTCAACACTTTGCCTCAAGCCCGATATTATAACGGTG
AGAGAACCGTGCCACAGACCAACGGCCTCCTCTCACCCCAACAGAGCGAAGAGGTGGCCAACCCTCCCCA
GCGGTGGCTTGTCACGCCTGTCCAGCAACCTGTGACCAACAAGCTAGACATCGGTTCTTATGAATCTGAA
TATACTTCCAGTACCTTGCTCCCATATGGTATTAAGTCCTTGCCCCTGCAGACATCCCATGCCCTGGGGT
ATTACCCTGACCCGACCTTCCCTGCTATGGCAGGGTGGGGAGGCCGTGGCGCTTATCAGAGGAAGATGGC
AGCTGGACTACCATGGACATCCAGAATGAGCCCACCTGTCTTCCCAGAAGATCAGCTTGCCAAGGAAAAA
GTTAAAGAAGAGATTAGTTCCTCCTGGATAGAGACTCCCCCCTCCATCAAGTCTCTAGACTCCAGCGACT
CCGGGGTGTACAACAGCGCTTGCAAGAGAAAGCGCCTGTCTCCCAGCACCCCCAGCAATGGAAACTCGCC
CCCCATAAAGTGTGAGGACATTAACACTGAAGAGTACAGTAAAGACACCTCCAAAGGCATGGGGGCTTAT
TATGCTTTTTACACAAGTCCCTAG

Translation (707 aa):
MQLGEQLLVSSVNLPGAHFYSLESARGGGGGGGGGGGGGGGSVSLLPGAAPSPQRLDLDKASKKFPGSLP
CQAGSAEPAGAGAGAPAAMLSDADAGDTFGSTSAVAKPGPPDGRKGSPCAEEELPSAATAAATARYSMDS
LSSERYYLPSPGPQGSELAAPCSLFQYPAAAGAAHGPVYPASNGARYPYGSMLPPGGFPAAVCPPARAQF
GPAAGSGSGAGSSGGGAGGPGAYPYGQGSPLYGPYAGTSAAGSCGGLGGLGVPGSGFRAHVYLCNRPLWL
KFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWRFQGGKWVTCGKADNNMQGNK
MYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSK
TQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRDNYDSMYTASENDRLTPSPTDSPRSHQIVPGGR
YGVQNFFPEPFVNTLPQARYYNGERTVPQTNGLLSPQQSEEVANPPQRWLVTPVQQPVTNKLDIGSYESE
YTSSTLLPYGIKSLPLQTSHALGYYPDPTFPAMAGWGGRGAYQRKMAAGLPWTSRMSPPVFPEDQLAKEK
VKEEISSSWIETPPSIKSLDSSDSGVYNSACKRKRLSPSTPSNGNSPPIKCEDINTEEYSKDTSKGMGAY
YAFYTSP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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