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Report for CCDS23571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23571.1 Public Mus musculus 9 Myl3 23 108 98 CCDS HistoryNCBI Gene:17897Re-query CCDS DB by CCDS ID:23571.1Re-query CCDS DB by GeneID:17897See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079784.11 ENSMUSP00000078715.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079784.11Link to Ensembl Protein Viewer:ENSMUSP00000078715.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000079784Re-query CCDS DB by Protein ID:ENSMUSP00000078715
Original member Current member NCBI NM_001364484.1 NP_001351413.1 Accepted alive Link to Nucleotide Sequence:NM_001364484.1Link to Protein Sequence:NP_001351413.1Re-query CCDS DB by Nucleotide ID:NM_001364484Re-query CCDS DB by Protein ID:NP_001351413Link to BLAST:NP_001351413.1
Original member Current member NCBI NM_010859.3 NP_034989.1 Accepted alive Link to Nucleotide Sequence:NM_010859.3Link to Protein Sequence:NP_034989.1Re-query CCDS DB by Nucleotide ID:NM_010859Re-query CCDS DB by Protein ID:NP_034989Link to BLAST:NP_034989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351413.1 204 P09542 204 100% 0 0
NP_034989.1 204 P09542 204 100% 0 0

Chromosomal Locations for CCDS 23571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110763745 110763900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110766479 110766506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110766621 110766770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110767908 110768081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110769102 110769179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110769415 110769443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGCCCCCAAAAAGCCAGAGCCCAAGAAGGATGATGCCAAAGCGGCTGCCCCCAAAGCAGCTCCAGCTC
CTGCGGCTGCACCTGCAGCTGCACCTGCGGCTGCACCAGAGCCTGAGCGCCCCAAGGAAGCCGAGTTTGA
TGCCTCCAAGATTAAGATCGAGTTCACACCTGAACAGATTGAAGAGTTCAAGGAGGCCTTCCTGCTGTTC
GACCGCACACCCAAGGGCGAGATGAAGATCACATACGGGCAGTGTGGGGATGTCCTGCGGGCTCTGGGTC
AGAATCCTACCCAGGCAGAGGTGCTCCGTGTCCTGGGGAAGCCAAAACAGGAAGAGCTCAATTCCAAGAT
GATGGATTTTGAGACGTTCCTGCCTATGCTCCAGCACATCTCCAAGAACAAGGACACTGGCACGTACGAG
GACTTCGTGGAGGGGCTGCGGGTCTTCGACAAGGAGGGCAACGGCACGGTCATGGGTGCAGAGCTCCGAC
ACGTGCTGGCCACGCTGGGTGAGAGACTGACAGAAGATGAGGTAGAGAAACTGATGGCTGGTCAAGAGGA
CTCCAACGGCTGCATCAACTATGAAGCGTTTGTGAAGCATATCATGGCGAGCTGA

Translation (204 aa):
MAPKKPEPKKDDAKAAAPKAAPAPAAAPAAAPAAAPEPERPKEAEFDASKIKIEFTPEQIEEFKEAFLLF
DRTPKGEMKITYGQCGDVLRALGQNPTQAEVLRVLGKPKQEELNSKMMDFETFLPMLQHISKNKDTGTYE
DFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQEDSNGCINYEAFVKHIMAS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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