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Report for CCDS23547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23547.1 Public Mus musculus 9 Fbxw21 23 108 98 CCDS HistoryNCBI Gene:320082Re-query CCDS DB by CCDS ID:23547.1Re-query CCDS DB by GeneID:320082See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054925.12 ENSMUSP00000056358.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054925.12Link to Ensembl Protein Viewer:ENSMUSP00000056358.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054925Re-query CCDS DB by Protein ID:ENSMUSP00000056358
Original member Current member NCBI NM_177069.3 NP_796043.1 Accepted alive Link to Nucleotide Sequence:NM_177069.3Link to Protein Sequence:NP_796043.1Re-query CCDS DB by Nucleotide ID:NM_177069Re-query CCDS DB by Protein ID:NP_796043Link to BLAST:NP_796043.1

Chromosomal Locations for CCDS 23547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109139500 109139611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109143278 109143402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109143695 109143873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109145460 109145670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109146547 109146705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109148019 109148228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109156298 109156416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109157518 109157681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109157876 109157913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109161900 109161989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGAGATCCATTTGCCTCGTTTGCCTCTGATGGAAATCTTCTCCTATCTGGATGCCTACAGTTTGCTAC
AGGTTGCCCAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTATGGAGGAAGTTGTGTCA
AAAGAGATGGTTCTACTGTAACATGGTCACCCAACAGCTCCTGGGTAAAGAGACATGGAAGGAGTTCTTC
ATTTACCGAACATGGCAAGAACATGCCAAGTCCCGGGCAAAGCCAGAAGATTTCATTTACAAGGAAATTC
CTGCAGAGTATGGAATTCAGGCATATGCATGTTATATCTCAGAGCATGGCTTAACAAGAAATGGACAAGG
CAGGTCTGTTATCTGTATGGCGACTTCCATGAACAGGATCTCTACCTGGGATATTCACGAGGGTGTTTTG
ACCTGGGTAAGCCCAGAACAGCCGGCAAGTATCAAGCTGTTGACTACCCTCCCTGAGATGTACATTGCAG
TCACTGTAGATATGGAATCAACTATCAAACTGTGGGACTGTCACAACAGTGAAGCTCTGGCAACTAACAG
CCTGATTTCTCCCTGTCAGTCACTGAAAGCTGTCATTACCAAGGATGGCCCAATTGTCTTGATAGGTGAT
ACCTTGGGTAACCTCAACATCTTTAGGATTCCCGACTTATACCATATTACCAGACTCAAAGTATTCCCAT
ACGGTATTAGTGAACTCTACTGCTCTCCTCAGAAGAAATGGATCTTTCTGAATAGGAAACACCCACATAT
CTTGCCAAAGGTGTTTTACATGAGCAGCTTACTGAGGACATCAGAATTCTCTGCCCCTGTGTCTACCGAT
CTCAAATTTTCATTGTGCCAAAGAGCCTTCTGGACTCCAAGAAGGGAAGACAGGATAACCCTGATGTCCA
TACATGGCCCCAAAAAAATCAAAAAGTTTATCACATTTGATATGGAGCTGGAAAAGATCGGGAACAAAAT
AACTGTTAAAGAGCATTTCTTTGCAAGCTTCTCATTGCAGAACTATGAGGAGAGACCAGAATGGTATGGA
GTTAGTGATAAGGATGTGATTGTTTGTTCAACTAGATTCTCTCTCTTGCTCTTCGACATAAATGGTCACT
GTCTGCAAGCATTTCAGTACTGCCCAGAACAGATCTTGAGACTATGGGTGGACCCCCTTCATGTCATCGT
CTCATGTAATGATGGCTTTTTGGATGTGTACGCATGGGAGGAGAGAAGCCAACAGCTCAATAAGTGTTAT
CGGCTGCAATACAGTAAACATCTGCCATCATCTGGCCTCATTAACAAAACACTAAGTGATGATGTAAGCA
TAATTCAAGTGATAACAATTCGAACCACCCCCTGCTTTCTGATGGCATTTATCTTGAAGTCTGCTCTTGA
AAACTGA

Translation (468 aa):
MEIHLPRLPLMEIFSYLDAYSLLQVAQVNKNWNELASSDVLWRKLCQKRWFYCNMVTQQLLGKETWKEFF
IYRTWQEHAKSRAKPEDFIYKEIPAEYGIQAYACYISEHGLTRNGQGRSVICMATSMNRISTWDIHEGVL
TWVSPEQPASIKLLTTLPEMYIAVTVDMESTIKLWDCHNSEALATNSLISPCQSLKAVITKDGPIVLIGD
TLGNLNIFRIPDLYHITRLKVFPYGISELYCSPQKKWIFLNRKHPHILPKVFYMSSLLRTSEFSAPVSTD
LKFSLCQRAFWTPRREDRITLMSIHGPKKIKKFITFDMELEKIGNKITVKEHFFASFSLQNYEERPEWYG
VSDKDVIVCSTRFSLLLFDINGHCLQAFQYCPEQILRLWVDPLHVIVSCNDGFLDVYAWEERSQQLNKCY
RLQYSKHLPSSGLINKTLSDDVSIIQVITIRTTPCFLMAFILKSALEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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