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Report for CCDS23515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23515.1 Public Mus musculus 9 Gmppb 23 108 98 CCDS HistoryNCBI Gene:331026Re-query CCDS DB by CCDS ID:23515.1Re-query CCDS DB by GeneID:331026See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047947.8 ENSMUSP00000036898.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047947.8Link to Ensembl Protein Viewer:ENSMUSP00000036898.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047947Re-query CCDS DB by Protein ID:ENSMUSP00000036898
Original member Current member EBI ENSMUST00000112295.8 ENSMUSP00000107914.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112295.8Link to Ensembl Protein Viewer:ENSMUSP00000107914.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112295Re-query CCDS DB by Protein ID:ENSMUSP00000107914
Original member NCBI NM_001357682.1 NP_001344611.1 Updated not alive Link to Nucleotide Sequence:NM_001357682.1Link to Protein Sequence:NP_001344611.1Re-query CCDS DB by Nucleotide ID:NM_001357682Re-query CCDS DB by Protein ID:NP_001344611
Current member NCBI NM_001357682.2 NP_001344611.1 Accepted alive Link to Nucleotide Sequence:NM_001357682.2Link to Protein Sequence:NP_001344611.1Re-query CCDS DB by Nucleotide ID:NM_001357682Re-query CCDS DB by Protein ID:NP_001344611Link to BLAST:NP_001344611.1
Original member NCBI NM_177910.4 NP_808578.1 Updated not alive Link to Nucleotide Sequence:NM_177910.4Link to Protein Sequence:NP_808578.1Re-query CCDS DB by Nucleotide ID:NM_177910Re-query CCDS DB by Protein ID:NP_808578
Current member NCBI NM_177910.5 NP_808578.1 Accepted alive Link to Nucleotide Sequence:NM_177910.5Link to Protein Sequence:NP_808578.1Re-query CCDS DB by Nucleotide ID:NM_177910Re-query CCDS DB by Protein ID:NP_808578Link to BLAST:NP_808578.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344611.1 360 Q8BTZ7 360 100% 0 0
NP_808578.1 360 Q8BTZ7 360 100% 0 0

Chromosomal Locations for CCDS 23515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108049517 108049645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108049761 108049841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108049929 108049977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108050115 108050257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108050451 108050609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108050694 108050772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108050849 108050976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108051060 108051242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108051326 108051457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGAAGGCACTGATCTTGGTGGGAGGGTATGGGACACGGTTGCGGCCGCTGACGTTGAGCACTCCGAAGC
CATTGGTGGACTTCTGCAATAAGCCCATCTTGCTGCATCAAGTGGAGGCGCTTGCTGCGGCAGGTGTGGA
CCACGTGATCCTGGCAGTGAGCTACATGTCACAGATGTTGGAGAAGGAAATGAAGGCACAAGAGCAAAGG
CTTGGAATCCGAATCTCTATGTCTCATGAAGAGGAGCCTTTGGGGACAGCTGGGCCTCTGGCGTTGGCCC
GAGACCTACTATCTGAGACTGCCGACCCTTTCTTCGTTCTCAACAGTGATGTGATATGTGATTTCCCCTT
CCAAGCCATGGTGCAGTTTCATCGGCACCATGGCCAAGAGGGCTCCATCTTGGTTACCAAGGTGGAAGAG
CCTTCCAAGTATGGTGTGGTGGTATGTGAGGCTGACACAGGCCGCATCCACCGTTTTGTTGAGAAGCCAC
AGGTGTTTGTGTCCAATAAGATCAACGCAGGCATGTACATCCTGAGCCCTGCTGTGCTGCAGCGCATCCA
GCTGAAGCCTACATCCATTGAGAAGGAGATCTTCCCAGTTATGGCCAAGGAGGGGCAGCTATATGCCATG
GAGCTGCAGGGCTTCTGGATGGACATTGGACAGCCCAAGGATTTCCTCACTGGCATGTGCCTCTTCCTAC
AATCGCTGAGACAGAAGCATCCAGAGAGACTGTACTCAGGCCCTGGCATTGTGGGGAATGTACTTGTGGA
CCCAAGTGCCCGTATCGGTCAGAACTGCAGCATTGGCCCCAATGTAAGCCTGGGTCCTGGTGTGGTGGTG
GAGGATGGTGTGTGCATCCGGCGATGCACAGTGCTTCGTGATGCTCACATCCGCTCCCATTCCTGGCTTG
AGTCATGCATCGTGGGCTGGCGCTGCCGTGTGGGCCAATGGGTGCGCATGGAGAATGTAACAGTGCTGGG
TGAAGATGTCATAGTTAATGATGAACTGTACCTCAATGGAGCCAGCGTGCTGCCCCACAAGTCTATCGGG
GAGTCAGTACCAGAACCTCGTATTATCATGTGA

Translation (360 aa):
MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQMLEKEMKAQEQR
LGIRISMSHEEEPLGTAGPLALARDLLSETADPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEE
PSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLKPTSIEKEIFPVMAKEGQLYAM
ELQGFWMDIGQPKDFLTGMCLFLQSLRQKHPERLYSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVV
EDGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIG
ESVPEPRIIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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