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Report for CCDS23483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23483.1 Public Mus musculus 9 Tex264 23 108 98 CCDS HistoryNCBI Gene:21767Re-query CCDS DB by CCDS ID:23483.1Re-query CCDS DB by GeneID:21767See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046735.10 ENSMUSP00000044654.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046735.10Link to Ensembl Protein Viewer:ENSMUSP00000044654.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046735Re-query CCDS DB by Protein ID:ENSMUSP00000044654
Original member Current member EBI ENSMUST00000163441.7 ENSMUSP00000132247.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163441.7Link to Ensembl Protein Viewer:ENSMUSP00000132247.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163441Re-query CCDS DB by Protein ID:ENSMUSP00000132247
Original member Current member EBI ENSMUST00000169068.7 ENSMUSP00000133194.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169068.7Link to Ensembl Protein Viewer:ENSMUSP00000133194.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169068Re-query CCDS DB by Protein ID:ENSMUSP00000133194
Original member Current member NCBI NM_001081654.2 NP_001075123.1 Accepted alive Link to Nucleotide Sequence:NM_001081654.2Link to Protein Sequence:NP_001075123.1Re-query CCDS DB by Nucleotide ID:NM_001081654Re-query CCDS DB by Protein ID:NP_001075123Link to BLAST:NP_001075123.1
Original member Current member NCBI NM_001286498.1 NP_001273427.1 Accepted alive Link to Nucleotide Sequence:NM_001286498.1Link to Protein Sequence:NP_001273427.1Re-query CCDS DB by Nucleotide ID:NM_001286498Re-query CCDS DB by Protein ID:NP_001273427Link to BLAST:NP_001273427.1
Original member Current member NCBI NM_011573.3 NP_035703.2 Accepted alive Link to Nucleotide Sequence:NM_011573.3Link to Protein Sequence:NP_035703.2Re-query CCDS DB by Nucleotide ID:NM_011573Re-query CCDS DB by Protein ID:NP_035703Link to BLAST:NP_035703.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075123.1 309 E9Q137-1 309 100% 0 0
NP_001273427.1 309 E9Q137-1 309 100% 0 0
NP_035703.2 309 E9Q137-1 309 100% 0 0

Chromosomal Locations for CCDS 23483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106659027 106659307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106662360 106662528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106673517 106673738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106681868 106682125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGCCGGATCTCCTACTACTGGGCCTGATTGGGGCCCTGACGCTGCTGTTGCTGCTGACGCTGCTGGCCT
TTGCTGGTTATTCAGGACTGCTGACTGGGGTGACAGTGAGCGCTGGATCACCCCCAATCCGCAACATAAC
TGTGGCCTACAAGTTCCACGTGGGGTCCTATGGTGACACTGGGCACCTTTTCACAGAGAGCTGCAGCATC
TCTCCCAAGCTCCGTTCCATCGCTGTCTACTATGACAACCCCCATACGGTGCCTCCTGAGAAGTGCCGCT
GTGCAGTCGGCAGCATCCTGAGTGAGGGGGAGGAGTCGCCTTCACCTGAGCTCATCCACCTCTATCAGAA
ATTTGGCTTCAAGATATTCTCCTTCCCAGCACCTAGCCATGTGGTCATAGCTACCTTCCCTTACACCACC
CCCATATCCATCTGGCTGGCTGCCCGCCGAGTCCATCCTGCCTTGGATACCTACATCAAGGAGCGGAAGC
TGTGTGCTCACCCTCGCCTGGAGATCTACCATCAAGACAAGATCCATTTCATGTGCCCACTGGCAAGGCA
AGGAGATTTCTACGTGCCAGAGGTGAAGGAGACAGAGCGGAAATGCCGGGAGCTTGCGGAGGCCACTGAC
ACCCAGACGGATGGCACAGGAGCTGATACAAGTGATGCAAGTTCTGTGAGCCTGGATGTTCGCCCTGGCA
GCCGGGAGACTTCAGCCACCACACTTTCTCCTGGGGCAGGCAACCGTGGCTGGGACGACGGTGACAACCG
CAGCGAGCACAGCTACAGTGAATCGGGTGCCAGTGGCTCATCCTTTGAGGAGCTGGACCTGGAGGGCGAG
GGACCCTTGGGAGAACCCCGACTGAACCCTGAAGCCAAGCTTCTGGGGCCCCCTCGGGAGCTCAGCACCC
CTGAGAGGGGTGAGGAGTAA

Translation (309 aa):
MPDLLLLGLIGALTLLLLLTLLAFAGYSGLLTGVTVSAGSPPIRNITVAYKFHVGSYGDTGHLFTESCSI
SPKLRSIAVYYDNPHTVPPEKCRCAVGSILSEGEESPSPELIHLYQKFGFKIFSFPAPSHVVIATFPYTT
PISIWLAARRVHPALDTYIKERKLCAHPRLEIYHQDKIHFMCPLARQGDFYVPEVKETERKCRELAEATD
TQTDGTGADTSDASSVSLDVRPGSRETSATTLSPGAGNRGWDDGDNRSEHSYSESGASGSSFEELDLEGE
GPLGEPRLNPEAKLLGPPRELSTPERGEE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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