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Report for CCDS23445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23445.1 Public Mus musculus 9 Ky 23 108 98 CCDS HistoryNCBI Gene:16716Re-query CCDS DB by CCDS ID:23445.1Re-query CCDS DB by GeneID:16716See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039390.5 ENSMUSP00000036032.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039390.5Link to Ensembl Protein Viewer:ENSMUSP00000036032.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039390Re-query CCDS DB by Protein ID:ENSMUSP00000036032
Original member NCBI NM_024291.3 NP_077253.3 Updated not alive Link to Nucleotide Sequence:NM_024291.3Link to Protein Sequence:NP_077253.3Re-query CCDS DB by Nucleotide ID:NM_024291Re-query CCDS DB by Protein ID:NP_077253
Current member NCBI NM_024291.4 NP_077253.3 Accepted alive Link to Nucleotide Sequence:NM_024291.4Link to Protein Sequence:NP_077253.3Re-query CCDS DB by Nucleotide ID:NM_024291Re-query CCDS DB by Protein ID:NP_077253Link to BLAST:NP_077253.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077253.3 661 Q8C8H8-1 661 99.8487% 0 1

Chromosomal Locations for CCDS 23445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 102506143 102506278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102509111 102509173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102512973 102513035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102521289 102521363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102523318 102523380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102525398 102525480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102526696 102526804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102527900 102528017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102537601 102537789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102538998 102539188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102541886 102542781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGGAGCTGAAGAAGGACAGCAACGCTGTGGCCATCGACATGCTGCTCATCGTGCACTCCGAGAAGCGGC
GCGCGGCGCAAGCCACGCACTTGGACCCGCAGGCGAACCCGGGCGCGCTGCTGCAAAACCGAGGAGGATT
CCAAGGTGTCAGAAACGGAATCCGGAAGTGGCAAGAGTTGGAAGAAAACAGCTTTCAGGGAAACTTGCCA
GAGAAGCAGTGCCTTCAGCAGCCGCAGGTCATCACCTCCTACGACAACCAAGGTACTCAGCTGACTGTGG
AAATCCACCCCCAAGACGCCATGCCCCAGCTGCTTAAGAAGTTCTCTTTGGCTAAACGTTTACAAGGTGA
TAAAAATGGAAACATGAGACCCCGGCAGCCTGGAGGGAAAGATGCCCACGCCTACCCCTGGGACAGATCC
AGTTTGAAATCCATGCCCCTGGACCTCCGGCTCTTTGAAAAACTGGATGCCTCTGCCTCACAGGTGACAG
TCAAGAGTGGCCTGAATGAGCTGGTGAGTGACTTGCTCCAGGAAGCCCACAGCGATCTGGAAAGGGTCAG
AGCCATCTGGATCTGGATCTGCCACCATATAGAGTACGACGTTGAGGCTGCCCAGGAGAAGGACCGCCAG
GCCTTCAAACCCACTGACATCCTGAGGACCCAGAAGACCAACTGTGATGGTTACGCCGGCCTCTTTGAAA
GGATGTGCAGGGTTGCTGGTGTGCAGTGTGTCACCGTGCCTGGCTACTCCAAGGGCTTTGGCTACCAGAC
CGGCCAAAGCTTCTCCGGAGAGTTCGACCACGCCTGGAACGCTGTGTACCTTGAGGGTCGTTGGCACCTG
GTGGACAGCACCTGGGGCAGCGGCCTGGTGGACACCACCACCTCCAAATTCACCTTCCTCTACAATGAAT
TCTACTTCCTCACCCACCCCGCCCTGTTCATCGAGGATCACTTCCCAGACAACAAAAACTGGCAGCTGCT
GAAGCCGCCCCAGTCTCTGAGGCAGTTTGAGAACAGCATGTACCACAAGAGTGAATTCTACAACAAGGGC
ATGCTGAGCGCCCACCCGGAGACGTCCATGATCAGAACAGTCAATGGGAAAGCCACAATCACCATCGAGA
GCCGGGCCCCAACACTGTTCATGTTCATGCTCAATGGCAAGCAGGAGCACGGGCTCCTGAGCCTCAGGAA
GAACGGGATGAAGCTGGAGGTGTACCCTCCAACCATGGGCACCCACAAGCTGCAGATCTTCGCCAAGGGC
AACTCTGAAATCTACAGCTCGGTGCTAGAATACACACTCAAGTGCAACTATGTAGACTTCTCTGTCCAGC
TGCCCAGTGAGCTCCACCAGCCCGTGGGCCCCAGCTGGTTCTCGGAGCAGATGGGCATCACGAAGCCCTC
TCACTCTGACCCTATCATTCACACCAGCGATGGCCGCTGCGCCATCAGCTTTAGCGTGGAAGAGGGCGTC
AGTGTCCTGGCATCCCTTCATGGCGATGACGGCCCCATCACTGAGGAGACACAGCGGCGCTACATCTTCC
AGTTGAACCGAGGGAAGAGGACCGAGCTCAAAGTCCAGCTGCCCCATGCCGGCAAGTTTGCCCTTAAGAT
CTTTGTGAAGAAGAGGCAGGAACAAGGGAACTTCATCTTTGTCTTCAACTACCTCTTGTGCTGCGCCAAC
ACCAAGGTGAACTGGCCCATGTTCCCTGAGAGCTTTGGCAACTGGGGACAGGACAATGAACTGCTAGAGC
CTCTCTCCGGTGTGCTTCCCGCCAACCGCAACATAGCCTTCAAACTAAAGCTGCATGGTATCGCCAAAGC
TCTGGTGAAAGGACAGGACACGTGGCCCCTCACTCTTAACCCCGAGGGCTACTGGGAGGGCAGCTGCAAC
ACAGCTGGCTGCCAGGAAGTCTACGTCATGGTGCTAGAGAATGCTAACCACAACTTCTACAGCTACATCC
TGAAATACAAAGTGAATGACCAGTGA

Translation (661 aa):
MELKKDSNAVAIDMLLIVHSEKRRAAQATHLDPQANPGALLQNRGGFQGVRNGIRKWQELEENSFQGNLP
EKQCLQQPQVITSYDNQGTQLTVEIHPQDAMPQLLKKFSLAKRLQGDKNGNMRPRQPGGKDAHAYPWDRS
SLKSMPLDLRLFEKLDASASQVTVKSGLNELVSDLLQEAHSDLERVRAIWIWICHHIEYDVEAAQEKDRQ
AFKPTDILRTQKTNCDGYAGLFERMCRVAGVQCVTVPGYSKGFGYQTGQSFSGEFDHAWNAVYLEGRWHL
VDSTWGSGLVDTTTSKFTFLYNEFYFLTHPALFIEDHFPDNKNWQLLKPPQSLRQFENSMYHKSEFYNKG
MLSAHPETSMIRTVNGKATITIESRAPTLFMFMLNGKQEHGLLSLRKNGMKLEVYPPTMGTHKLQIFAKG
NSEIYSSVLEYTLKCNYVDFSVQLPSELHQPVGPSWFSEQMGITKPSHSDPIIHTSDGRCAISFSVEEGV
SVLASLHGDDGPITEETQRRYIFQLNRGKRTELKVQLPHAGKFALKIFVKKRQEQGNFIFVFNYLLCCAN
TKVNWPMFPESFGNWGQDNELLEPLSGVLPANRNIAFKLKLHGIAKALVKGQDTWPLTLNPEGYWEGSCN
TAGCQEVYVMVLENANHNFYSYILKYKVNDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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