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Report for CCDS23395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23395.1 Public Mus musculus 9 Minar1 23 108 98 CCDS HistoryNCBI Gene:209743Re-query CCDS DB by CCDS ID:23395.1Re-query CCDS DB by GeneID:209743See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23395.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044491.12 ENSMUSP00000046111.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044491.12Link to Ensembl Protein Viewer:ENSMUSP00000046111.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044491Re-query CCDS DB by Protein ID:ENSMUSP00000046111
Original member Current member NCBI NM_153509.2 NP_705729.1 Accepted alive Link to Nucleotide Sequence:NM_153509.2Link to Protein Sequence:NP_705729.1Re-query CCDS DB by Nucleotide ID:NM_153509Re-query CCDS DB by Protein ID:NP_705729Link to BLAST:NP_705729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705729.1 917 Q8K3V7-1 917 100% 0 0

Chromosomal Locations for CCDS 23395.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 89591103 89591300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89596436 89596690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89601042 89603342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGGAGGCCAATCAGGAAGCTTCCCTCTTTTTGGTGAAGATCTTAGAAGAACTGGACAGTAAACAAAATA
CTGTTTCCTATCAAGACCTGTGCAAGTCACTCTGTGCCCAGTTTGATCTGTCTCAGCTTGCCAAACTGAG
AAGTGTGCTTTTCTATACAGCATGCCTCGATCCCAACTTTCCAGCAACTTTATTCAAAGACAAGATGAAA
TGCTCTGTAAATAATCAGCAGTCAAAGAAAATCATGGTGGCAGCAGATATCGTAACAATCTTCAACCTGA
TCCAGATGAATGGGGGCACTGCCAAGGAGAAGCTGCCCATGAGTTGCCACAAGGTGCGCAAGAAGGAAGC
ATCCTTTGAGTCTTGCCGGTCCGACACCGAGGTGTGCAGCCCGACAGTTTGTGAGCCTCTGAACTGTGAG
CTGAGTGAGAGACCCTTCAGCCGAGGCTACCCCACCAGGCAGTCATCCAAATGCCGGAAGATGGACTGTA
AGGAATGCCCACAGTTTGTCCCTGCCTCTGAGCCCAACTTCCTGTTGGGTGTTAGCAAAGAGGTGAAAAA
TCGGGCAGCCTCTCTGGATAGGCTGCAAGCCCTGTCCCCCTATTCTGTGGCCAGCCCTCAGCCCTGTGAG
ATGCAGAGGACCTATTTCCCCATGAATATTGAGAACGAGCCCATGTCAGATCAGGACTCTCTGCCCATCA
GCCAAGGCATCAAAGAGACCTTCATCTCCAGTGAGGAACCGTTTGTGGTTCAGTCCTGTGTTCAGAAAAG
GAACATCTTCAAAGAAGACTTCCACAATCTCATGACTGTATCCCCCAGTTTGGTTGGTACAACTAACAAA
GCAGAAGAGGGTCATGGGGAGCCCCAGAGTCAGAAGGAGCTCCACAAGCCACCCTTCTTCAACCACAGCT
TTGAGATGCCTTACCACAACCAATACCTGAATCCGGTGTATTCCCCCATCCCTGACAAAAGGCGGGCGAA
GCATGAAAGCTTAGATGACCTTCAAGCCTCTACCTATTTTGGACCCACTCCAGTGATGGGAACACAAGAT
ACCAGGCGCTGTCCAGGGAGGTCCAGTAAACAGACTCCATGGCCCGCCAAAAGCTGGAGCCTAAACACGG
AGGAAGTGCCTGATTTCGAACGCTCCTTTTTCAATAGAAATCCCTCTGAAGAGAAGCTACGCTATCCAAA
TTCTGGCAGCCAGACTCCCAATTTCTCAGGCCCAGACAGGCATCCAGTTTACTTGGTGCCAAAGGATCAA
CAGAAGGTTCTCCCTGCTGGCTATGCAGTGAAACCAAATGGACTCAAATCGAAAGAGATCTCGTCCCCTG
TTGACCTAGAGAAGCACGAAGCAGTCAAGAAGTTTAAAGACAAAAGCATCAGCTGCACCAGTGGGCAGCA
CAGCTCAGACACCAGTAGTGTGGGTACCCAGACAGAGCAGCATGTGCTGGATCCCCCCAAATGCAAAGAT
TTGTGTACTTCGGGTCAGGCCAAGTACGGTGACAGGCATGCCATGAAGCAGTCGGACGATGACTCAGAAA
TCGTCAGCGACGACATCAGTGACATTTTCCGGTTTCTCGATGACATGAGCATCAGCGGCTCCACAGGAGT
GATACAGTCATCCTGCTACAACAGCACCGGCTCCTTGTCTCAGCTTCATAAGTCAGACTGTGATAGTTCG
CCAGAGCACCACCTCGCCAAAATCACCAATGGGGTCTCCAGCGGCAAGGGGGACAAGTGTAACCGGCCTG
AAAACGTCCATCACTCCGAGGAAGAGTTGAAGAGTAGCGTGTGCAAACTGGTTCTCAGGATTGGTGAGAT
AGAGCGGAAGCTGGAATCGCTGTCTGGGGTCCGAGAGGAAATCTCCCAGGTCCTTGGGAAACTCAATAAA
CTGGATCAGAAAATACAGCAGCCGGAGAAAGTGAATGTGCAGATTGACCTGAACTCCTTGACGAGTGAGG
CACCTTCTGATGACAGCGCCTCTCCGAGGGTCTTCCGTGCACACAGTGGCTCCCACGGACCTAAGCTGGA
GAACAGTCCTGACTGGTGCTGCTCAGATGCCAGTGGAAGTAACAGTGAAAGCCTGCGTGTCAAGGCCTTA
AAGAAAAGCCTCTTTACCAGGCCATCTTCCAGGTCCCTGACTGAGGAGAACAGTGCCACAGAGTCTAAAA
TTGCCAGCATCTCGAACTCTCCCAGAGACTGGCGAACCATCACATACACCAACCGGATGAGCCTCAACGA
GGAGGAGATAAAAGATGCAGGCCCAGCCAATAACAAAGATTGGCATCGGAAATCTAAGGAGGCAGACAGG
CAGTATGACATCCCCCCACAGCACAGATTGCCCAAGCAGCCCAAAGATGGCTTCCTGGTGGAGCAGGTGT
TCAGCCCTCATCCTTACCCCACCTCCCTCAAGGGCCACATGAAGAGCAACCCCCTGTATACAGACATGCG
GCTGACTGAACTAGCTGAGGTGAAGCGGGGCCAGCCTTCTTGGACCATAGAGGAATATGCTCGGAACTCC
GGTGACAAAGGCAAGCTGACAGCTCTGGACCTGCAGACCCAAGAATCTTTAAACCCAAACAACTTAGAGT
ACTGGATGGAAGATATTTATACTCCAGGCTATGATTCATTACTAAAACGGAAAGAAGCTGAATTCAGACG
AGCCAAGGTTTGCAAGATCGCTGCTCTTATCACTGCTGCTGCATGCACGGTCATTCTTGTCATTGTTGTG
CCAATCTGCACGATGAAGTCCTGA

Translation (917 aa):
MEANQEASLFLVKILEELDSKQNTVSYQDLCKSLCAQFDLSQLAKLRSVLFYTACLDPNFPATLFKDKMK
CSVNNQQSKKIMVAADIVTIFNLIQMNGGTAKEKLPMSCHKVRKKEASFESCRSDTEVCSPTVCEPLNCE
LSERPFSRGYPTRQSSKCRKMDCKECPQFVPASEPNFLLGVSKEVKNRAASLDRLQALSPYSVASPQPCE
MQRTYFPMNIENEPMSDQDSLPISQGIKETFISSEEPFVVQSCVQKRNIFKEDFHNLMTVSPSLVGTTNK
AEEGHGEPQSQKELHKPPFFNHSFEMPYHNQYLNPVYSPIPDKRRAKHESLDDLQASTYFGPTPVMGTQD
TRRCPGRSSKQTPWPAKSWSLNTEEVPDFERSFFNRNPSEEKLRYPNSGSQTPNFSGPDRHPVYLVPKDQ
QKVLPAGYAVKPNGLKSKEISSPVDLEKHEAVKKFKDKSISCTSGQHSSDTSSVGTQTEQHVLDPPKCKD
LCTSGQAKYGDRHAMKQSDDDSEIVSDDISDIFRFLDDMSISGSTGVIQSSCYNSTGSLSQLHKSDCDSS
PEHHLAKITNGVSSGKGDKCNRPENVHHSEEELKSSVCKLVLRIGEIERKLESLSGVREEISQVLGKLNK
LDQKIQQPEKVNVQIDLNSLTSEAPSDDSASPRVFRAHSGSHGPKLENSPDWCCSDASGSNSESLRVKAL
KKSLFTRPSSRSLTEENSATESKIASISNSPRDWRTITYTNRMSLNEEEIKDAGPANNKDWHRKSKEADR
QYDIPPQHRLPKQPKDGFLVEQVFSPHPYPTSLKGHMKSNPLYTDMRLTELAEVKRGQPSWTIEEYARNS
GDKGKLTALDLQTQESLNPNNLEYWMEDIYTPGYDSLLKRKEAEFRRAKVCKIAALITAAACTVILVIVV
PICTMKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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