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Report for CCDS23244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23244.1 Public Mus musculus 9 Cd276 23 108 98 CCDS HistoryNCBI Gene:102657Re-query CCDS DB by CCDS ID:23244.1Re-query CCDS DB by GeneID:102657See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039788.10 ENSMUSP00000042681.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039788.10Link to Ensembl Protein Viewer:ENSMUSP00000042681.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039788Re-query CCDS DB by Protein ID:ENSMUSP00000042681
Original member Current member EBI ENSMUST00000165365.2 ENSMUSP00000129418.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165365.2Link to Ensembl Protein Viewer:ENSMUSP00000129418.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165365Re-query CCDS DB by Protein ID:ENSMUSP00000129418
Original member NCBI NM_133983.4 NP_598744.1 Updated not alive Link to Nucleotide Sequence:NM_133983.4Link to Protein Sequence:NP_598744.1Re-query CCDS DB by Nucleotide ID:NM_133983Re-query CCDS DB by Protein ID:NP_598744
Current member NCBI NM_133983.5 NP_598744.1 Accepted alive Link to Nucleotide Sequence:NM_133983.5Link to Protein Sequence:NP_598744.1Re-query CCDS DB by Nucleotide ID:NM_133983Re-query CCDS DB by Protein ID:NP_598744Link to BLAST:NP_598744.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598744.1 316 Q8VE98 316 100% 0 0

Chromosomal Locations for CCDS 23244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58526339 58526361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58527519 58527554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58528452 58528493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58530596 58530730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58535456 58535752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58537269 58537607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58540667 58540745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCTTCGAGGATGGGGTGGCCCCAGTGTGGGTGTGTGTGTGCGCACAGCACTGGGGGTGCTGTGCCTCT
GCCTCACAGGAGCTGTGGAAGTCCAGGTCTCTGAAGACCCCGTGGTGGCCCTGGTGGACACGGATGCCAC
CCTACGCTGCTCCTTTTCCCCAGAGCCTGGCTTCAGTCTGGCACAGCTCAACCTCATCTGGCAGCTGACA
GACACCAAACAGCTGGTGCACAGCTTCACGGAGGGCCGGGACCAAGGCAGTGCCTACTCCAACCGCACAG
CGCTCTTCCCTGACCTGTTGGTGCAAGGCAATGCGTCCTTGAGGCTGCAGCGCGTCCGAGTAACCGACGA
GGGCAGCTACACCTGCTTTGTGAGCATCCAGGACTTTGACAGCGCTGCTGTTAGCCTGCAGGTGGCCGCC
CCCTACTCGAAGCCCAGCATGACCCTGGAGCCCAACAAGGACCTACGTCCAGGGAACATGGTGACCATCA
CGTGCTCTAGCTACCAGGGCTATCCGGAGGCCGAGGTGTTCTGGAAGGATGGACAGGGAGTGCCCTTGAC
TGGCAATGTGACCACATCCCAGATGGCCAACGAGCGGGGCTTGTTCGATGTTCACAGCGTGCTGAGGGTG
GTGCTGGGTGCTAACGGCACCTACAGCTGCCTGGTACGCAACCCGGTGTTGCAGCAAGATGCTCACGGCT
CAGTCACCATCACAGGGCAGCCCCTGACATTCCCCCCTGAGGCTCTGTGGGTAACCGTGGGGCTCTCTGT
CTGTCTTGTGGTACTACTGGTGGCCCTGGCTTTCGTGTGCTGGAGAAAGATCAAGCAGAGCTGCGAGGAG
GAGAATGCAGGTGCCGAGGACCAGGATGGAGATGGAGAAGGATCCAAGACAGCTCTACGGCCTCTGAAAC
CCTCTGAAAACAAAGAAGATGACGGACAAGAAATTGCTTGA

Translation (316 aa):
MLRGWGGPSVGVCVRTALGVLCLCLTGAVEVQVSEDPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLT
DTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAA
PYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRV
VLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPEALWVTVGLSVCLVVLLVALAFVCWRKIKQSCEE
ENAGAEDQDGDGEGSKTALRPLKPSENKEDDGQEIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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