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Report for CCDS23112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23112.1 Public Mus musculus 9 Upk2 23 108 98 CCDS HistoryNCBI Gene:22269Re-query CCDS DB by CCDS ID:23112.1Re-query CCDS DB by GeneID:22269See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047740.3 ENSMUSP00000040481.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047740.3Link to Ensembl Protein Viewer:ENSMUSP00000040481.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000047740Re-query CCDS DB by Protein ID:ENSMUSP00000040481
Original member Current member NCBI NM_009476.2 NP_033502.2 Accepted alive Link to Nucleotide Sequence:NM_009476.2Link to Protein Sequence:NP_033502.2Re-query CCDS DB by Nucleotide ID:NM_009476Re-query CCDS DB by Protein ID:NP_033502Link to BLAST:NP_033502.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033502.2 184 P38575 184 98.3696% 0 3

Chromosomal Locations for CCDS 23112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44452973 44453109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44453483 44453553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44453795 44453933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44454062 44454193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44454631 44454706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGCATCCACACTGCCTGTCCAGACCTTGCCCCTGATCCTGATTCTGCTGGCTGTCCTGGCTCCGGGGA
CTGCAGACTTCAACATCTCAAGCCTCTCTGGTCTGCTGTCTCCGGCGCTAACAGAAAGCCTGTTAATTGC
CTTGCCCCCATGTCACCTCACGGGAGGTAATGCCACATTGATGGTCCGGAGAGCCAACGACAGCAAAGTG
GTTAAGTCAGACTTTGTGGTGCCTCCATGTCGCGGGCGCAGGGAGCTTGTGAGCGTGGTGGACAGTGGGT
CTGGCTACACCGTCACAAGGCTCAGCGCATATCAGGTGACAAACCTAACACCAGGAACCAAATACTACAT
ATCCTACCGAGTACAGAAGGGGACATCCACCGAGTCCAGTCCAGAGACTCCCATGTCCACGCTTCCTCGA
AAAAACATGGAGTCTATTGGGTTAGGAATGGCCCGGACAGGAGGGATGGTGGTCATCACAGTGCTGCTGT
CTGTGGCCATGTTCCTGTTGGTCGTGGGTCTTATTGTTGCCCTGGCACTGGGTGCCCGCAAATGA

Translation (184 aa):
MASTLPVQTLPLILILLAVLAPGTADFNISSLSGLLSPALTESLLIALPPCHLTGGNATLMVRRANDSKV
VKSDFVVPPCRGRRELVSVVDSGSGYTVTRLSAYQVTNLTPGTKYYISYRVQKGTSTESSPETPMSTLPR
KNMESIGLGMARTGGMVVITVLLSVAMFLLVVGLIVALALGARK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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