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Report for CCDS22902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22902.1 Public Mus musculus 9 Ap1m2 23 108 98 CCDS HistoryNCBI Gene:11768Re-query CCDS DB by CCDS ID:22902.1Re-query CCDS DB by GeneID:11768See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003397.8 ENSMUSP00000003397.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003397.8Link to Ensembl Protein Viewer:ENSMUSP00000003397.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003397Re-query CCDS DB by Protein ID:ENSMUSP00000003397
Original member NCBI NM_009678.2 NP_033808.2 Updated not alive Link to Nucleotide Sequence:NM_009678.2Link to Protein Sequence:NP_033808.2Re-query CCDS DB by Nucleotide ID:NM_009678Re-query CCDS DB by Protein ID:NP_033808
Current member NCBI NM_009678.3 NP_033808.2 Accepted alive Link to Nucleotide Sequence:NM_009678.3Link to Protein Sequence:NP_033808.2Re-query CCDS DB by Nucleotide ID:NM_009678Re-query CCDS DB by Protein ID:NP_033808Link to BLAST:NP_033808.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033808.2 423 Q9WVP1-1 423 99.7636% 0 1

Chromosomal Locations for CCDS 22902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21295832 21295854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21296433 21296508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21298200 21298325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21299279 21299437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21302456 21302527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21302623 21302765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21305282 21305408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21305493 21305771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21309367 21309434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21309636 21309792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21312207 21312248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGTCGGCCTCGGCAGTCTTCATTCTGGACGTCAAGGGCAAGCCTCTGATTAGCCGAAACTACAAAGGTG
ATGTGCCCATGACAGAGATTGACCACTTCATGCCGCTGCTTATGCAGCGTGAGGAGGAGGGCGTGCTGGC
CCCGCTGCTGAGCCACGGCCGAGTGCACTTCCTGTGGATCAAACACAGCAACCTCTACTTGGTGGCCACC
ACGCTGAAGAACGCTAATGCCTCTCTGGTGTACTCCTTTCTGTACAAGACTGTGGAGGTCTTCTGCGAGT
ACTTTAAGGAGCTGGAGGAGGAGAGCATCCGGGACAACTTCGTCATCGTGTACGAGCTGCTGGATGAGCT
CATGGACTTCGGCTTTCCGCAGACCACAGACAGCAAGATCCTGCAGGAGTACATCACACAACAGGGCAAC
AAGCTGGAGACTGGCAAATCTCGTGTACCACCTACAGTCACCAATGCGGTGTCGTGGCGCTCTGAGGGCA
TTAAGTACAAAAAGAATGAGGTCTTCATTGATGTCATTGAGTCTGTCAACCTTCTGGTCAATGCTAATGG
GAGTGTCTTGCTCAGCGAGATTGTGGGCACCATCAAGCTGAAGGTGTTTCTGTCTGGGATGCCAGAGCTG
CGGCTGGGCCTCAATGACCGAGTGCTCTTTGAGCTTACTGGCCGCAGCAAGAACAAGTCTGTGGAACTGG
AAGATGTGAAATTCCACCAATGTGTGAGGCTTTCACGCTTTGACAACGACCGAACCATCTCCTTCATACC
CCCAGATGGGGACTTTGAACTCATGTCCTACCGGCTTAGCACCCAGGTCAAACCCCTGATCTGGATCGAG
TCAGTCATTGAGAAATTCTCGCACAGCCGAGTGGAGATCATGGTGAAGGCCAAGGGTCAGTTTAAGAAGC
AGTCGGTGGCCAATGGCGTGGAAATCTCTGTGCCCGTTCCTAGTGATGCAGACTCTCCGCGCTTCAAGAC
CAGTGTGGGCAGTGCCAAGTATGTGCCTGAGAAGAATGTTGTCATCTGGAGCATCAAGTCATTCCCTGGG
GGAAAGGAGTACTTGATGCGTGCCCACTTTGGCCTCCCCAGCGTGGAAACTGAGGAGGTAGAGGGCCGAC
CACCCATCGGGGTCAAGTTTGAGATTCCATACTTTACCGTTTCTGGCATCCAGGTCCGTTACATGAAGAT
CATCGAGAAAAGTGGGTACCAGGCCCTGCCCTGGGTCCGTTACATCACGCAGAGTGGTGATTATCAACTT
CGTACCAGCTAG

Translation (423 aa):
MSASAVFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWIKHSNLYLVAT
TLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQGN
KLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPEL
RLGLNDRVLFELTGRSKNKSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIE
SVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSIKSFPG
GKEYLMRAHFGLPSVETEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQL
RTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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