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Report for CCDS2290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2290.1 Public Homo sapiens 2 NUP35 24 110 108 CCDS HistoryNCBI Gene:129401Re-query CCDS DB by CCDS ID:2290.1Re-query CCDS DB by GeneID:129401See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2290.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295119.9 ENSP00000295119.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295119.9Link to Ensembl Protein Viewer:ENSP00000295119.4Re-query CCDS DB by Nucleotide ID:ENST00000295119Re-query CCDS DB by Protein ID:ENSP00000295119
Original member Current member NCBI NM_138285.5 NP_612142.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138285.5Link to Protein Sequence:NP_612142.2Re-query CCDS DB by Nucleotide ID:NM_138285Re-query CCDS DB by Protein ID:NP_612142Link to BLAST:NP_612142.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612142.2 326 Q8NFH5-1 326 100% 0 0

Chromosomal Locations for CCDS 2290.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 183124458 183124497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 183128287 183128457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 183130418 183130545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 183133566 183133623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 183151508 183151649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 183157444 183157513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 183158283 183158411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 183159488 183159652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 183161054 183161131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCAGCCTTTGCAGTGGAACCTCAGGGGCCCGCGTTAGGATCTGAACCAATGATGCTGGGTTCACCCA
CATCTCCAAAGCCAGGAGTTAATGCCCAGTTCTTACCTGGATTTTTAATGGGGGATTTGCCAGCTCCGGT
GACTCCACAACCTCGATCAATTAGTGGCCCTTCAGTAGGAGTAATGGAAATGAGATCACCTTTACTTGCA
GGTGGGTCACCACCACAACCAGTTGTACCAGCTCATAAAGATAAAAGTGGCGCTCCACCAGTTAGAAGTA
TATATGATGACATTTCTAGCCCAGGACTTGGATCAACACCTTTAACTTCAAGAAGACAGCCAAACATTTC
AGTAATGCAGAGTCCTCTTGTTGGAGTTACATCTACTCCTGGAACAGGGCAAAGTATGTTTAGTCCAGCA
AGTATCGGTCAGCCACGAAAGACGACATTATCTCCTGCCCAGTTGGATCCTTTTTATACTCAAGGAGATT
CTTTGACTTCAGAAGATCACCTCGATGACTCTTGGGTGACTGTATTTGGGTTTCCTCAAGCATCTGCTTC
CTACATATTACTACAATTTGCACAGTATGGGAATATCTTAAAACATGTGATGTCTAATACAGGAAATTGG
ATGCATATTCGTTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAGATGGGAGGATTTTTGGAG
AATCCATCATGATTGGTGTAAAACCATGTATTGACAAAAGTGTTATGGAAAGCAGTGACAGATGTGCTTT
ATCATCTCCATCTTTAGCCTTTACACCACCAATCAAAACTCTAGGTACACCAACACAACCTGGAAGTACT
CCTAGGATTTCTACCATGAGACCTCTTGCTACAGCATACAAAGCCTCTACTAGTGATTATCAGGTTATTT
CTGACAGACAAACGCCAAAAAAAGATGAAAGTCTTGTATCCAAAGCAATGGAGTACATGTTTGGCTGGTA
G

Translation (326 aa):
MAAFAVEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLA
GGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPA
SIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNW
MHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGST
PRISTMRPLATAYKASTSDYQVISDRQTPKKDESLVSKAMEYMFGW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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