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Report for CCDS22880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22880.1 Public Mus musculus 9 Fbxl12 23 108 98 CCDS HistoryNCBI Gene:30843Re-query CCDS DB by CCDS ID:22880.1Re-query CCDS DB by GeneID:30843See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086459.5 ENSMUSP00000083650.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086459.5Link to Ensembl Protein Viewer:ENSMUSP00000083650.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086459Re-query CCDS DB by Protein ID:ENSMUSP00000083650
Original member Current member EBI ENSMUST00000148631.7 ENSMUSP00000119124.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148631.7Link to Ensembl Protein Viewer:ENSMUSP00000119124.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148631Re-query CCDS DB by Protein ID:ENSMUSP00000119124
Original member Current member NCBI NM_013911.3 NP_038939.2 Accepted alive Link to Nucleotide Sequence:NM_013911.3Link to Protein Sequence:NP_038939.2Re-query CCDS DB by Nucleotide ID:NM_013911Re-query CCDS DB by Protein ID:NP_038939Link to BLAST:NP_038939.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038939.2 326 Q9EPX5 326 100% 0 0

Chromosomal Locations for CCDS 22880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20638377 20639198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20642024 20642096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20642204 20642289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCGACTCTGTTTGACCTCCCAGACTTGGTGCTCTTGGAGATCTTCTCTTACCTCCCTGTCCGGGACC
GGATCCGCATCTCCAGGGTCTGTCACCGCTGGAAGAGGCTAGTGGATGACCGGTGGCTATGGCGACACGT
CGACCTGACGCTCTACACGATGCGGCCGAAAGTCATGTGGCACCTCCTGCGCCGGTACATGGCGTCCCGG
CTCTACTCGTTGCGCATGGGCGGCTACCTGTTTTCTGGCTCTCAGGCCCCACAGCTGTCCCCCGCCTTGA
TGAGGGCCCTGGGTCAGAAATGCCCCAATCTGAAGCGCCTGTGCCTGCACGTGGCTGACCTGAGCATGGT
GCCTATCACCAGCCTTCCTAGCACACTGAGGACCCTGGAGCTGCACAGCTGCGAAATCTCCATGATCTGG
TTGCAGAAAGAGCAGGACCCCACGGTGCTGCCTCTGCTGGAATGCATCGTGCTGGACCGAGTGCCGGCCT
TTCGCGATGAGCATCTGCAGGGCCTTACCCGATTCCGAGCCCTGCGCTCGCTGGTGCTGGGCGGCACCTA
CCGGGTCACTGAGACCGGGCTAGATGCCAGCCTGCAGGAGCTCAGCTACCTGCAAAGGCTTGAGGTGCTG
GGCTGCACCCTGTCAGCTGACAGCACGCTGCTGGCCATCAGCCGCCACCTTCGAGATGTGCGCAAGATTC
GGCTGACCGTTGGGGGCCTCTCAGCCCAGGGCCTGGTCTTCCTGGAGGGAATGCCTGTCCTGGAGAGTTT
GTGCTTCCAGGGTCCCCTTATCACCCCAGACATGCCCACACCCACTCAGATTGTGTCCTCCTGCCTCACC
ATGCCGAAGCTCAGAGTGCTTGAGGTGCAAGGGCTGGGCTGGGAGGGTCAGGAAGCAGAGAAAATCCTGT
GCAAGGGCCTGCCCCACTGCATAGTTATTGTTAGGGCTTGTCCCAAAGAATCCATGGATTGGTGGATGTG
A

Translation (326 aa):
MATLFDLPDLVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRYMASR
LYSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVADLSMVPITSLPSTLRTLELHSCEISMIW
LQKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETGLDASLQELSYLQRLEVL
GCTLSADSTLLAISRHLRDVRKIRLTVGGLSAQGLVFLEGMPVLESLCFQGPLITPDMPTPTQIVSSCLT
MPKLRVLEVQGLGWEGQEAEKILCKGLPHCIVIVRACPKESMDWWM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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