NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22806.1 Under review, update Mus musculus 9 Mmp3 23 108 98 CCDS HistoryNCBI Gene:17392Re-query CCDS DB by CCDS ID:22806.1Re-query CCDS DB by GeneID:17392See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 22806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034497.7 ENSMUSP00000034497.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034497.7Link to Ensembl Protein Viewer:ENSMUSP00000034497.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034497Re-query CCDS DB by Protein ID:ENSMUSP00000034497
Original member NCBI NM_010809.2 NP_034939.1 Updated not alive Link to Nucleotide Sequence:NM_010809.2Link to Protein Sequence:NP_034939.1Re-query CCDS DB by Nucleotide ID:NM_010809Re-query CCDS DB by Protein ID:NP_034939
Current member NCBI NM_010809.3 NP_034939.2 Pending alive Link to Nucleotide Sequence:NM_010809.3Link to Protein Sequence:NP_034939.2Re-query CCDS DB by Nucleotide ID:NM_010809Re-query CCDS DB by Protein ID:NP_034939Link to BLAST:NP_034939.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034939.2 477 P28862 477 100% 0 0

Chromosomal Locations for CCDS 22806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 7445898 7446008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7446933 7447177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7447268 7447416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7447522 7447647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7449749 7449913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7450066 7450210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7451207 7451340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7451739 7451898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7453616 7453719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7455590 7455690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGAAAATGAAGGGTCTTCCGGTCCTGCTGTGGCTGTGTGTGGTTGTGTGCTCATCCTACCCATTGCATG
ACAGTGCAAGGGATGATGATGCTGGTATGGAGCTTCTGCAGAAATACCTAGAAAACTACTATGGCCTTGC
AAAAGATGTGAAGCAATTTATTAAGAAAAAGGACAGTAGTCTTATTGTCAAAAAAATTCAAGAAATGCAG
AAGTTCCTCGGGTTGGAGATGACAGGGAAGCTGGACTCCAACACTATGGAGCTGATGCATAAGCCCAGGT
GTGGTGTTCCTGATGTTGGTGGCTTCAGTACCTTCCCAGGTTCGCCAAAATGGAGGAAATCCCACATCAC
CTACAGGATTGTGAATTATACACCGGATTTGCCAAGACAGAGTGTGGATTCTGCCATTGAAAAAGCTTTG
AAGGTCTGGGAGGAGGTGACCCCACTCACTTTCTCCAGGATCTCTGAAGGAGAGGCTGACATAATGATCT
CCTTTGCAGTTGGAGAACATGGAGACTTTGTCCCTTTTGATGGGCCTGGAACAGTCTTGGCTCATGCCTA
TGCACCTGGACCAGGGATTAATGGAGATGCTCACTTTGACGATGATGAACGATGGACAGAGGATGTCACT
GGTACCAACCTATTCCTGGTTGCTGCTCATGAACTTGGCCACTCCCTGGGACTCTACCACTCAGCCAAGG
CTGAAGCTCTGATGTACCCAGTCTACAAGTCCTCCACAGACTTGTCCCGTTTCCATCTCTCTCAAGATGA
TGTAGATGGTATTCAGTCCCTCTATGGAACTCCCACAGCATCCCCTGATGTCCTCGTGGTACCCACCAAG
TCTAACTCTCTGGAACCTGAGACATCACCAATGTGCAGCTCTACTTTGTTCTTTGATGCAGTCAGCACCC
TCCGGGGAGAAGTCCTGTTTTTTAAAGACAGGCACTTTTGGCGCAAATCTCTCAGGACTCCTGAGCCTGA
ATTTTATTTGATCTCTTCATTTTGGCCATCTCTTCCATCCAACATGGATGCTGCATATGAGGTTACTAAC
AGAGACACTGTTTTCATTTTTAAAGGAAATCAGTTCTGGGCTATACGAGGGCACGAGGAGCTAGCAGGTT
ATCCTAAAAGCATTCACACCCTGGGTCTCCCTGCAACCGTGAAGAAGATCGATGCTGCCATTTCTAATAA
AGAGAAAAGGAAGACCTACTTCTTTGTAGAGGACAAATACTGGAGGTTTGATGAGAAGAAACAATCCATG
GAGCCAGGATTTCCCAGGAAGATAGCTGAGGACTTTCCAGGTGTTGACTCAAGGGTGGATGCTGTCTTTG
AAGCATTTGGGTTTCTCTACTTCTTCAGTGGATCTTCGCAGTTGGAATTTGACCCAAATGCCAAAAAAGT
GACCCACATATTGAAGAGCAATAGCTGGTTTAATTGTTAA

Translation (479 aa):
MKMKGLPVLLWLCVVVCSSYPLHDSARDDDAGMELLQKYLENYYGLAKDVKQFIKKKDSSLIVKKIQEMQ
KFLGLEMTGKLDSNTMELMHKPRCGVPDVGGFSTFPGSPKWRKSHITYRIVNYTPDLPRQSVDSAIEKAL
KVWEEVTPLTFSRISEGEADIMISFAVGEHGDFVPFDGPGTVLAHAYAPGPGINGDAHFDDDERWTEDVT
GTNLFLVAAHELGHSLGLYHSAKAEALMYPVYKSSTDLSRFHLSQDDVDGIQSLYGTPTASPDVLVVPTK
SNSLEPETSPMCSSTLFFDAVSTLRGEVLFFKDRHFWRKSLRTPEPEFYLISSFWPSLPSNMDAAYEVTN
RDTVFIFKGNQFWAIRGHEELAGYPKSIHTLGLPATVKKIDAAISNKEKRKTYFFVEDKYWRFDEKKQSM
EPGFPRKIAEDFPGVDSRVDAVFEAFGFLYFFSGSSQLEFDPNAKKVTHILKSNSWFNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH