NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22776.1 Public Mus musculus 8 Gnpat 23 108 98 CCDS HistoryNCBI Gene:14712Re-query CCDS DB by CCDS ID:22776.1Re-query CCDS DB by GeneID:14712See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034466.9 ENSMUSP00000034466.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034466.9Link to Ensembl Protein Viewer:ENSMUSP00000034466.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034466Re-query CCDS DB by Protein ID:ENSMUSP00000034466
Original member Current member NCBI NM_010322.3 NP_034452.3 Accepted alive Link to Nucleotide Sequence:NM_010322.3Link to Protein Sequence:NP_034452.3Re-query CCDS DB by Nucleotide ID:NM_010322Re-query CCDS DB by Protein ID:NP_034452Link to BLAST:NP_034452.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034452.3 678 P98192 678 100% 0 0

Chromosomal Locations for CCDS 22776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 124863238 124863312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124870776 124870958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124873333 124873509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124874219 124874348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124876920 124877047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124877435 124877510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124878513 124878664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124878784 124878914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124880129 124880352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124883356 124883598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124884965 124885044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124885795 124885935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124886683 124886779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124886853 124886946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124887758 124887819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124889272 124889315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGGACGTTCCTAGCTCCTCCAGCTCCCGATTCTCGGTCGGCTCGGCCAGCCCTAGCAGTGTGCTCCTCT
ATGCGAAAGACCTCAAAAAGTGGGATGAGTTTGAAGATCTGTTAGAGGAGAGGAGACACATCAGTGACTT
CAAATTTGCAATGAAGTGCTACACCCCGCCCTTGTATAGGGGGATCACTCCCTGCAAGCCAGGGGACATC
AAGTCCATTGTCCTCAGTTCTGAAGAGATCAACTATGTCATTAAGCAGCTTTCTAGGGAGTCGCTGACAG
GTGTGGATGTCCTCCGAGAGGAAGCCAGTGAGATCCTCGAGGAGATGAGCCACAAACTGCGCATAGGAGC
CATTCGGTTCTTTGCCTTTGTTCTGAGCAAAATCTTTAAACAGATCTTCTCAAAGGTGTGTGTGAATGAA
GAAGGCATTCAAAAGCTACAACGCGCTGTCCAGGAGCACCCTGTGGTCCTGCTGCCCAGTCACCGCAGCT
ACATTGACTTCCTCATGCTGTCCTTCATTCTCTACAGCTATGACCTGCCTGTGCCAGTGATCGCAGCAGG
AATGGACTTCCTGGGAATGAGAGTGGTCAGTGAGCTGCTCAGGATGTCTGGGGCCTTCTTCATGCGACGC
ACTTTTGGAGGAAATAAACTCTACTGGGCCGTATTCTCTGAATATGTGAAGACCATGCTGCGGTGTGGTT
ATGCTCCTGTTGAATTTTTCCTCGAAGGGACGAGGAGCCGAGCTGCCAAGACCCTGACTCCTAAGTTTGG
TCTCCTGAATATTGTGATGGAACCATTTTTTAAAAGAGAAGTCTTCGATACCTACTTTGTCCCAATTAGC
ATCAGTTATGATAAAATATTGGAAGAGAGTCTTTATGCATATGAGATCCTCGGAGTTCCTAAGCCGAAGG
AGTCCACCACTGGATTGTTGAAAGCTAGACGGATTCTCTCTGAGAACTTTGGAAGCATCCATGTGTACTT
CGGAGACCCTGTATCACTGCGTTCTCTAGCTGCAGGGCGGCTCAATCGGAACACGTATAACTTGGTGCCA
AGATGCATCCCTCAGAAGCAGCCTGAGGACGTGCAAGCCTTTGTCACTGAGGTCGCCTATAAGATGCAGC
TTCTGCAGATTGAAAACCTGGCTCTGAGCCCATGGCTCCTGGTGGTCACCATTCTACTTCAAAACCAGCT
ATCCATGGACTTTGACGCCCTGGTGGAGAAGACTCTGTGGCTGAAGGGCGTAACCCAGGTGTTCGGCGGG
TTCCTGCTTTGGCCTGATAACAAACTTCCTGAGGAAGTGGTCCAGTCCAGCATCCTCCTGCACTCTAACC
TGGCCAGCCTTGTCAAAGACCAGGTGGTTCTGAAAATGAACTCTGGAAGCTCACAAGTGGTCAACGGGCT
TGTGCCCGAACATATCGCCCTCCTCATGTGCTCTGCCTACAGGAACCAGCTGCTCAACATTTTTGCCCGT
CCTTCCTTAGTCGCCCTGGCTTTGCACATGACACCTGGGCTCAGGAAAGAGGATGTCTTCAGTTGCTTTT
CCTTCCTCCGCAATGTGTTTTCAGATGAGTTCATCTTCCTTCCAGGAAACACACTCAGGGACTTTGAGGA
AGGCTGTTACTTGCTGTGTAAAGCTGAGGCTATGCAGATGGCTGGGAAGGACATCATCCTCACAGACAAA
GGAACTGCTGTGTTACAGTTCCTCACAAGCCTCTTTAAGCCTTTTGTGGAATCATATCAGTTACTTTGCA
GATACCTTTTGCATGAAGAGGACTACTTCGGTGAGAAGGAATACTTGGTTGCAGCCAGGAAGTTCACCCG
TCAGCTTCTGGATCAAGGCTCCTCTCAGTGTTACGATGCGCTGTCTTCTGAACTGCAGAAAAATGCCTTA
GCAGCTTTCGTGAGACTGGGGGTGGTGGAAAAGAAGAAGGTAGATAGTAAGTATGTGTATTATGTGAACG
GGCCTGCCACAAGCAAGTTAGAAGAAATGCTCGGATGTAAGAAGCCAATAGGAAAACCAGCCACTGCAAA
ACTATAA

Translation (678 aa):
MDVPSSSSSRFSVGSASPSSVLLYAKDLKKWDEFEDLLEERRHISDFKFAMKCYTPPLYRGITPCKPGDI
KSIVLSSEEINYVIKQLSRESLTGVDVLREEASEILEEMSHKLRIGAIRFFAFVLSKIFKQIFSKVCVNE
EGIQKLQRAVQEHPVVLLPSHRSYIDFLMLSFILYSYDLPVPVIAAGMDFLGMRVVSELLRMSGAFFMRR
TFGGNKLYWAVFSEYVKTMLRCGYAPVEFFLEGTRSRAAKTLTPKFGLLNIVMEPFFKREVFDTYFVPIS
ISYDKILEESLYAYEILGVPKPKESTTGLLKARRILSENFGSIHVYFGDPVSLRSLAAGRLNRNTYNLVP
RCIPQKQPEDVQAFVTEVAYKMQLLQIENLALSPWLLVVTILLQNQLSMDFDALVEKTLWLKGVTQVFGG
FLLWPDNKLPEEVVQSSILLHSNLASLVKDQVVLKMNSGSSQVVNGLVPEHIALLMCSAYRNQLLNIFAR
PSLVALALHMTPGLRKEDVFSCFSFLRNVFSDEFIFLPGNTLRDFEEGCYLLCKAEAMQMAGKDIILTDK
GTAVLQFLTSLFKPFVESYQLLCRYLLHEEDYFGEKEYLVAARKFTRQLLDQGSSQCYDALSSELQKNAL
AAFVRLGVVEKKKVDSKYVYYVNGPATSKLEEMLGCKKPIGKPATAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH