NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22754.1 Public Mus musculus 8 Spire2 23 108 98 CCDS HistoryNCBI Gene:234857Re-query CCDS DB by CCDS ID:22754.1Re-query CCDS DB by GeneID:234857See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010298.6 ENSMUSP00000010298.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010298.6Link to Ensembl Protein Viewer:ENSMUSP00000010298.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000010298Re-query CCDS DB by Protein ID:ENSMUSP00000010298
Original member Current member NCBI NM_172287.2 NP_758491.1 Accepted alive Link to Nucleotide Sequence:NM_172287.2Link to Protein Sequence:NP_758491.1Re-query CCDS DB by Nucleotide ID:NM_172287Re-query CCDS DB by Protein ID:NP_758491Link to BLAST:NP_758491.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758491.1 718 Q8K1S6-1 718 100% 0 0

Chromosomal Locations for CCDS 22754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123332765 123333020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123346640 123346683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123354019 123354375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123356523 123356600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123356714 123356878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123357643 123357729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123358110 123358233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123359342 123359511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123360073 123360262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123361250 123361365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123363019 123363153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123363323 123363390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123366836 123366863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123368678 123368793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123369172 123369394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGGCCCGGGCGGGCGGCGGCGGCGCAGCAGCTCCCGAACGCGCGGGGGGCGCGGCGCGGCCCGAGCCGT
GGGAGCTGTCCCTGGAGGAAGTGCTGAAGGTGTACGAGCAGCCCATCAACGAGGAGCAGGCCTGGGCGGT
GTGCTTCCAGGGCTGCCGCGGGCTGCGGGGCGAGCCGGGCGGCGTGCGGCGCATCCGGGACACGGCAGAC
ATCCTCCTGCGTAGGGACGGTTCGGTTGGCGCGCGGCTGGAGCCCGAGCCTACAACCATGGTGGTACCAC
CAGCCAGCTCAGAAGCCCAGATGGTGCAGTCACTGGGCTTTGCCATTTACCGTGCGCTGGACTGGGGGTT
AGATGAGAACGAGGAGAGAGAGCTCAGCCCGCAGCTGGAAAGGCTCATCGACCTCATGGCCAACAGCGAC
TGCGAAGACAGCAGCTGCGGGGCAGCGGATGAGGGCTACGTGGGTCCAGAAGAGGAGGAGGAGGCTGAGG
GCGGCCCCCGAGCTGTGCGCACCTTTGCCCAGGCTATGCGGCTGTGTGCTTTGCGCCTGACCGACCCCCA
CGGCGCGCAGGCCCACTACCAGGCAGTGTGCCGAGCTCTCTTTGTGGAGACACTGGAGCTTCGTGCCTTC
CTGGCCCGGGTGAGGGAGGCCAAAGAGATGCTGAAGAAACTGGGGGAGGAGGAGCCACGGGAGAAGCCAC
TGGCCGAGCTCGACCACCTGGGACACACAGACTGGGCCCGGCTGTGGGTCCAGCTCATGCGGGAGCTCCG
TCACGGGGTAAAGCTGAAGAAGGTGCAGGAGAAGGAGTTCAACCCACTGCCCACCGAGTTCCAGCTCACC
CCCTTCGAGATGCTGATGCAGGATATCCGTGCCAGGAACTATAAGCTGCGCAAGGTCATGGTCGATGGGG
ACATCCCTCCCAGGGTGAAGAAGGACGCACATGAACTTATCCTGGACTTCATTCGTTCTCGGCCTCCACT
GAAGCAGGTCTCAGAGAGACAACTTCGCCCTGTACCACAGAAGCAAAGAACACTGCACGAGAAGATCCTG
GAGGAAATCAAGCAGGAGCGGAGGCTTCGTCCAGTCGGGGCCCAGCACTTGGGAGGCCGTGGGTTTGGTT
CCCTGCCCTGCATCCTCAATGCCTGCTCTGGGGACATCAAGTCCACTTCCTGCATCAACCTGTCTGTCAC
CGATACTGGGAGCGGGAGTCAGCGCCCACGGCCCCGGGTCCTGCTCAAAGCCCCCACCCTTGCAGAGATG
GAAGAAATGAACACGTCTGAGGAAGAAGAGTCCCCATGTGGGGAGGTGGCACTGAAGCGGGACCGCTCTT
TTTCGGAACACGACCTGGCCCAGCTTCGGAGCGAGATGGCATCTGGCCTTCAGTCAGCCGCTCAGCCCCC
AGGAGGGACGGAGCCACCTCGGGCCAGAGCAGGTAGCATGCACTCCTGGAGGCCCAGCAGCCGAGACCAG
GGTTTCTGTCCTGTGAGCGGCCAGTCCCAGCCTCTCCCCAGCTCTGCCTTGCCCAGTAGCTTGAGCTCAG
TGGATGGACCTGAGGCGGCTTCACCAGATACCAGACACCTGTGGCTGGAGTTCAGCCACCCTGTGGAGAG
CCTGGCTCTGACTGTGGAAGAGGTGGTGGACGTGCGCAGGGTGCTGGTGAAGGCGGAGATGGAGAGGTTT
CTGCAGGACAAGGAGCTCTTCAGCAGCCTGAAGAGGGGGAAGATTTGCTGTTGCTGCCGAGCCAAGTTTC
CCCTGTTTTCCTGGCCACCCACCTGTCTCTTCTGCAAGAGAGCTGTGTGCACTTCCTGTAGCGTAAAGAT
GAAGATGCCTTCCAAGAAGTATGGACACATCCCTGTCTACACACTTGGCTTTGAGAGTCTTCAGAGGGTG
CCAACTACCAAAGCCACGCCAACACTGAGGAGAGATGCCTTCCAATCCCTGCAGGGACCAAAGTGGCGGA
GCGTGGAGGAGGAGTTCCCCCACATCTATGCCCACGGCTGTGTCCTAAAGGATGTCTGCAGTGACTGCAC
CAGCTTTGTGGCTGATGTCGTGTGCTCCAGCCGCAAGAGCGTGGATGTCCTCAATGCCACTCCACGACGA
AGCCGTCAGACCCAGTCCCTCTATATCCCCAACACCAGGACTCTCAACTTCCAATGA

Translation (718 aa):
MARAGGGGAAAPERAGGAARPEPWELSLEEVLKVYEQPINEEQAWAVCFQGCRGLRGEPGGVRRIRDTAD
ILLRRDGSVGARLEPEPTTMVVPPASSEAQMVQSLGFAIYRALDWGLDENEERELSPQLERLIDLMANSD
CEDSSCGAADEGYVGPEEEEEAEGGPRAVRTFAQAMRLCALRLTDPHGAQAHYQAVCRALFVETLELRAF
LARVREAKEMLKKLGEEEPREKPLAELDHLGHTDWARLWVQLMRELRHGVKLKKVQEKEFNPLPTEFQLT
PFEMLMQDIRARNYKLRKVMVDGDIPPRVKKDAHELILDFIRSRPPLKQVSERQLRPVPQKQRTLHEKIL
EEIKQERRLRPVGAQHLGGRGFGSLPCILNACSGDIKSTSCINLSVTDTGSGSQRPRPRVLLKAPTLAEM
EEMNTSEEEESPCGEVALKRDRSFSEHDLAQLRSEMASGLQSAAQPPGGTEPPRARAGSMHSWRPSSRDQ
GFCPVSGQSQPLPSSALPSSLSSVDGPEAASPDTRHLWLEFSHPVESLALTVEEVVDVRRVLVKAEMERF
LQDKELFSSLKRGKICCCCRAKFPLFSWPPTCLFCKRAVCTSCSVKMKMPSKKYGHIPVYTLGFESLQRV
PTTKATPTLRRDAFQSLQGPKWRSVEEEFPHIYAHGCVLKDVCSDCTSFVADVVCSSRKSVDVLNATPRR
SRQTQSLYIPNTRTLNFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH