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Report for CCDS22746.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22746.1 Public Mus musculus 8 Cdh15 23 108 98 CCDS HistoryNCBI Gene:12555Re-query CCDS DB by CCDS ID:22746.1Re-query CCDS DB by GeneID:12555See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22746.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034443.6 ENSMUSP00000034443.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034443.6Link to Ensembl Protein Viewer:ENSMUSP00000034443.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034443Re-query CCDS DB by Protein ID:ENSMUSP00000034443
Original member Current member NCBI NM_007662.2 NP_031688.2 Accepted alive Link to Nucleotide Sequence:NM_007662.2Link to Protein Sequence:NP_031688.2Re-query CCDS DB by Nucleotide ID:NM_007662Re-query CCDS DB by Protein ID:NP_031688Link to BLAST:NP_031688.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031688.2 784 P33146 784 100% 0 0

Chromosomal Locations for CCDS 22746.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122848488 122848529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122856502 122856657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122857360 122857515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122859238 122859382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122860838 122860998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122861457 122861585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122861978 122862163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122863305 122863558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122864243 122864385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122864499 122864738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122864990 122865229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122865328 122865464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122865598 122865762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122866823 122867023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGGTTCTGCTCTGCTCCTCGCCCTCGGGCTGCTTGCCCAGAGCCTTGGCCTGTCCTGGGCAGTCCCTG
AGCCCAAACCCAGCACCCTGTACCCCTGGCGCCGGGCATCAGCCCCAGGCCGTGTGCGGAGAGCCTGGGT
CATCCCACCCATTAGTGTGTCTGAGAACCACAAACGCCTCCCCTACCCACTTGTGCAGATCAAGTCTGAC
AAACAGCAGCTAGGCAGTGTCATCTACAGCATCCAGGGTCCCGGAGTGGATGAGGAGCCCCGAAATGTCT
TCTCCATCGACAAGTTCACCGGGAGGGTGTACCTCAATGCCACGCTGGACCGCGAGAAGACGGACCGCTT
CAGGCTAAGGGCCTTTGCCTTGGACTTGGGTGGCTCTACCCTGGAGGACCCCACGGACCTGGAGATCGTT
GTGGTGGATCAAAATGACAACCGGCCAGCCTTCCTACAGGATGTGTTCAGAGGCCGCATCCTGGAGGGTG
CCATCCCAGGCACCTTCGTCACCAGGGCTGAGGCCACAGATGCCGACGACCCAGAGACAGACAATGCAGC
CCTCAGGTTCTCCATCCTGGAGCAGGGCAGCCCTGAGTTCTTCAGCATCGACGAGCACACGGGAGAGATC
CGCACGGTGCAAGTGGGGCTGGACCGTGAGGTGGTGGCTGTGTATAATCTGACCTTGCAAGTGGCAGACA
TGTCGGGAGACGGACTCACTGCCACAGCCTCGGCCATCATCTCCATAGATGACATCAACGACAATGCCCC
CGAGTTCACCAAGGATGAGTTCTTTATGGAGGCTGCAGAGGCTGTCAGTGGAGTGGACGTGGGACGGCTC
GAGGTGGAAGACAAGGACCTGCCTGGTTCCCCCAACTGGGTGGCCAGGTTCACCATCCTTGAAGGTGATC
CTGATGGGCAGTTCAAGATCTACACAGACCCTAAGACCAATGAAGGTGTGCTGTCCGTGGTCAAGCCCCT
GGACTATGAGAGCCGTGAGCAGTATGAGCTCAGAGTGTCTGTACAAAACGAGGCCCCGCTGCAGGCAGCT
GCCCCTCGGGCTCGGCGGGGCCAGACCAGGGTCAGCGTGTGGGTTCAGGACACCAACGAAGCTCCAGTGT
TTCCAGAGAACCCACTGAGGACGAGCATAGCTGAAGGAGCCCCCCCAGGCACCTCTGTGGCCACCTTCTC
TGCCAGAGACCCTGACACAGAACAGCTGCAGAGAATCAGCTACTCCAAAGACTACGACCCAGAAGACTGG
CTGCAAGTGGACGGGGCCACAGGCAGGATCCAGACCCAGCGAGTGCTGAGCCCTGCTTCACCCTTTTTGA
AGGACGGCTGGTACAGAGCCATCATCCTAGCCCTGGACAATGCCATTCCTCCTAGCACAGCCACAGGCAC
CCTGTCCATCGAGATCCTAGAAGTCAACGACCATGCCCCTGCACTGGCTCTTCCTCCATCTGGCAGCCTG
TGCAGTGAACCAGACCAGGGCCCTGGCCTCCTCTTGGGTGCCACGGATGAGGACCTGCCCCCACACGGGG
CCCCTTTCCACTTCCAGCTGAACCCCAGAGTACCAGATCTGGGCCGGAACTGGAGCGTCAGCCAGATTAA
CGTGAGCCATGCACGCTTGCGGCTCCGACATCAGGTCTCCGAGGGCCTGCATCGCCTGAGCCTGCTACTC
CAGGACTCTGGGGAGCCACCCCAGCAGCGAGAGCAAACGCTGAACGTCACCGTGTGTCGCTGTGGGTCGG
ATGGCACTTGCCTGCCCGGGGCTGCCGCGCTTCGAGGAGGAGGTGTAGGCGTCAGCTTGGGGGCACTGGT
CATTGTGCTGGCCAGCACCGTGGTCTTACTAGTTCTCATCCTGCTTGCCGCGCTCCGCACACGGTTCCGG
GGGCATTCCCGGGGCAAGAGTCTGTTGCATGGCCTACAAGAGGACCTTCGGGACAACATCCTTAACTATG
ATGAGCAAGGAGGCGGGGAGGAGGACCAGGATGCGTACGACATAAACCAGCTGCGCCACCCAGTGGAGCC
GAGGGCCACAAGTCGCTCTTTGGGCAGGCCACCCCTGCGCAGGGATGCCCCCTTCAGCTATGTGCCACAG
CCACATCGAGTGCTTCCCACCAGCCCATCTGACATTGCCAACTTCATCAGTGATGGCTTGGAGGCTGCGG
ACAGCGACCCCAGCGTGCCTCCCTACGACACAGCTCTCATCTATGACTACGAGGGAGATGGCTCTGTGGC
AGGGACGCTGAGCTCCATTCTGTCCAGCCTGGGAGATGAAGACCAGGACTATGACTACCTCCGGGACTGG
GGACCCCGCTTTGCTCGGCTGGCGGACATGTATGGACATCAGTGA

Translation (784 aa):
MGSALLLALGLLAQSLGLSWAVPEPKPSTLYPWRRASAPGRVRRAWVIPPISVSENHKRLPYPLVQIKSD
KQQLGSVIYSIQGPGVDEEPRNVFSIDKFTGRVYLNATLDREKTDRFRLRAFALDLGGSTLEDPTDLEIV
VVDQNDNRPAFLQDVFRGRILEGAIPGTFVTRAEATDADDPETDNAALRFSILEQGSPEFFSIDEHTGEI
RTVQVGLDREVVAVYNLTLQVADMSGDGLTATASAIISIDDINDNAPEFTKDEFFMEAAEAVSGVDVGRL
EVEDKDLPGSPNWVARFTILEGDPDGQFKIYTDPKTNEGVLSVVKPLDYESREQYELRVSVQNEAPLQAA
APRARRGQTRVSVWVQDTNEAPVFPENPLRTSIAEGAPPGTSVATFSARDPDTEQLQRISYSKDYDPEDW
LQVDGATGRIQTQRVLSPASPFLKDGWYRAIILALDNAIPPSTATGTLSIEILEVNDHAPALALPPSGSL
CSEPDQGPGLLLGATDEDLPPHGAPFHFQLNPRVPDLGRNWSVSQINVSHARLRLRHQVSEGLHRLSLLL
QDSGEPPQQREQTLNVTVCRCGSDGTCLPGAAALRGGGVGVSLGALVIVLASTVVLLVLILLAALRTRFR
GHSRGKSLLHGLQEDLRDNILNYDEQGGGEEDQDAYDINQLRHPVEPRATSRSLGRPPLRRDAPFSYVPQ
PHRVLPTSPSDIANFISDGLEAADSDPSVPPYDTALIYDYEGDGSVAGTLSSILSSLGDEDQDYDYLRDW
GPRFARLADMYGHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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