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Report for CCDS22628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22628.1 Public Mus musculus 8 Nfatc3 23 108 98 CCDS HistoryNCBI Gene:18021Re-query CCDS DB by CCDS ID:22628.1Re-query CCDS DB by GeneID:18021See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109308.2 ENSMUSP00000104931.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109308.2Link to Ensembl Protein Viewer:ENSMUSP00000104931.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109308Re-query CCDS DB by Protein ID:ENSMUSP00000104931
Original member Current member NCBI NM_010901.3 NP_035031.2 Accepted alive Link to Nucleotide Sequence:NM_010901.3Link to Protein Sequence:NP_035031.2Re-query CCDS DB by Nucleotide ID:NM_010901Re-query CCDS DB by Protein ID:NP_035031Link to BLAST:NP_035031.2

Chromosomal Locations for CCDS 22628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106059891 106059993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106078604 106079741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106083811 106083973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106092032 106092231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106096164 106096336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106099072 106099212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106100934 106100989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106104025 106104151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106108125 106109129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106127918 106128042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3231 nt):
ATGACTACTGCAAACTGTGGCGCCCACGACGAGCTCGACTTCAAACTCGTCTTCGGCGAGGACGGGGCAC
CAGCGCCGGTGTCCCAGGTCTCGCGGCCTGCAGATCTTGAACCAGATGATTGTGCATCCATTTACATCTT
TAATGTAGATCCACCTCCATCTACTTTAAACTCATCCCTTGGCTTACCACATCATGGACTGCTGCAGTCT
CACTCTTCTGTTTTGTCACCATCATTTCAGCTCCAAGGTTACAAAAATTATGAAGGAACTGGTGATATTT
CTGAATCTAAATATAGTCCATTAGGTGGTCCTAAACCCTTTGAGTGCCCAAGTATTCAAATCACATCCAT
TTCTCCTAACTGTCATCAAGGAACAGATGCTCATGAAGATGACCTACATATAAATGACCCAGAAAGGGAA
TATTTGGAAAGGCCTTCTAGAGATCATCTCTATCTTCCACTTGAGCCATCCTACCGGGAATCTTCCCTCA
GTCCTAGTCCTGCCAGCAGCATTTCTTCTAGGAGCTGGTTCTCAGATGCATCTTCTTGTGAATCTCTCTC
CCACATTTATGATGATGTGGACTCAGAGTTGAATGAAGCTGCTGCACGATTCACTCTTGGTTCACCTCTG
ACTTCTCCAGGTGGCTCTCCAGGAGGTTGCCCTGGAGAAGAGTCCTGGCATCAACAGTATGGATCTGGAC
ACTCCTTGTCACCTAGGCAATCTCCTTGCCACTCTCCTAGATCTAGTATCACTGATGAGAATTGGCTGAG
CCCCAGACCAGCCTCAGGACCCTCATCAAGGCCCACTTCTCCCTGTGGTAAACGACGGCACTCCAGTGCT
GAAGTATGTTATGCTGGTTCCCTTTCACCCCATCACTCGCCTGTTCCATCCCCTGGTCACTCTCCTAGAG
GAAGTGTAACAGAAGATACCTGGCTCACTGCTCCTGTCCACACTGGATCAGGCCTCAGCCCTGCACCGTT
TCCATTTCAGTACTGTGTAGAGACTGACATCCCTTTGAAAACAAGGAAGACTTCTGAAGATCAAGCTGCC
ATACTACCAGGAAAATTAGAGATCTGTTCAGATGATCAAGGGAACTTATCCCCTTCCCGGGAGACATCAG
TAGATGATGGCCTTGGATCTCAGTATCCTTTAAAGAAAGATTCATCTGGTGACCAATTTCTTTCAGTTCC
TTCACCCTTTACCTGGAGCAAACCAAAGCCTGGCCACACCCCTATATTTCGCACATCTTCATTACCTCCA
TTAGACTGGCCTTTACCAACTCACTTTGGACAATGTGAATTGAAAATAGAAGTGCAACCTAAAACTCACC
ATAGAGCCCATTATGAAACTGAAGGTAGCCGAGGGGCAGTGAAAGCCTCTACTGGTGGCCATCCTGTTGT
GAAGCTCCTGGGCTATAGTGAAAAGCCAATAAATCTACAGATGTTTATTGGAACAGCCGATGATAGATAT
TTACGACCTCATGCATTTTACCAGGTGCATCGGATTACTGGAAAGACAGTTGCTACTGCAAGTCAAGAGA
TAATAATCGCCAGCACAAAAGTTCTGGAAATCCCACTTCTACCTGAAAATAATATGTCAGCGAGTATTGA
CTGTGCAGGTATTTTAAAGCTCCGCAACTCAGATATAGAACTTCGAAAAGGAGAAACTGATATTGGCAGA
AAAAATACTAGAGTCCGACTTGTATTTCGTGTGCACATCCCACAGCCCAGTGGAAAAGTTCTTTCTCTAC
AGATAGCATCTATTCCTGTTGAGTGCTCTCAGCGATCTGCTCAAGAACTCCCTCATATTGAGAAGTACAG
TATCAACAGTTGCTCTGTCAATGGAGGCCACGAAATGATTGTGACTGGATCTAATTTTCTTCCAGAATCC
AAAATAATTTTTCTTGAAAAAGGACAAGATGGAAGACCTCATTGGGAGGCTGAAGGAAAAATAATCAGAG
AAAAATGTCAAGGGGCTCACATTGTCCTTGAAGTTCCTCCCTATCATAACCCAGCAGTTACATCTGCCGT
GCAGGTGCACTTTTATCTTTGCAATGGCAAGAGGAAAAAAAGCCAGTCTCAACGTTTTACTTACACACCA
GTTTTGATGAAGCAAGAACAAAGAGAAGACACAGATTTGCCTTCAGTTCCATCTTTGCCTGTGCCTCATT
CTGCCCAGGCCCAGAGGCCCTCCTCAGAGACAGGGCACCCCCATGACCGTGCGATGTCAGCACCGGGAAG
CCTGCTTTGTCAAGTGCAGCCAGCATATACATCTATGGTAGCCTCCACCCATTTGCCACAGTTGCAGTGT
AGGGATGAAGGTGCTGGTAAAGAGCAGCACATAGCAACATCTTCAGTCATGCACCAGCCTTTCCAAGTTA
CACCAACATCTCCTATAGGGTCTTCCTATCAGTCTATACAAACTAGTATGTATAACGGTCCAACCTGTCT
TCCTGTGAATCCTGCCTCTAGTCAAGAATTTGACCCAGTTTTGTTTCAGCAAGATGCAGCTCTTTCTAGT
TTAGTAAATCTTGGCTGTCAACCACTGTCACCAATACCATTTCATTCTTCAAATTCAGATGCGACAGGAC
ATCTCTTAGCACATTCACCTCATTCTGTGCAAACCCCACCTCATCTGCAGTCAATGGGATACCATTGTTC
AAATGCAGGACAAACAGCTCTTTCTTCTCCAGTGGCAGACCAGATCACAGGTCAGCCTTCTTCTCATTTA
CAGCCTATTACATATTGTCCTTCACACCCAGGATCTGCTACAGCAGCTTCCCCAGCAGCCTCTCATCCTC
TGGCTAGTTCACCGATTTCTGGGCCATCATCCCCTCAGCTGCAGCCTATGCCTTATCAATCTCCTAGCTC
AGGAACTGCCTCATCACCATCTCCAACTACCAGAATGCATTCTGGACAGCACTCAACTCAAGCACAAAGT
ACAGGCCAAGGAGGCCTTTCTGTTCCTTCATCCTTAGTATGTCACAGTTTGTGTGACCCAGCGTCATTTC
CGCCTGGTGGTGCAACTGTGAGCATTAAACCTGAACCTGAAGATCAAGAACCTAACTTTGCAACCATTGG
TCTACAGGATATCACCTTAGATGATGTGAACGAGATTATTGGGAGAGACATGTCCCAGATTTCTGTTTCC
CAAGCCACGGAGGTGATGAGAGACACTCCTCTCCCGGGTCCGGCGTCTCCAGATCTGATGACCTCTCACA
GTGCTCAGTGA

Translation (1076 aa):
MTTANCGAHDELDFKLVFGEDGAPAPVSQVSRPADLEPDDCASIYIFNVDPPPSTLNSSLGLPHHGLLQS
HSSVLSPSFQLQGYKNYEGTGDISESKYSPLGGPKPFECPSIQITSISPNCHQGTDAHEDDLHINDPERE
YLERPSRDHLYLPLEPSYRESSLSPSPASSISSRSWFSDASSCESLSHIYDDVDSELNEAAARFTLGSPL
TSPGGSPGGCPGEESWHQQYGSGHSLSPRQSPCHSPRSSITDENWLSPRPASGPSSRPTSPCGKRRHSSA
EVCYAGSLSPHHSPVPSPGHSPRGSVTEDTWLTAPVHTGSGLSPAPFPFQYCVETDIPLKTRKTSEDQAA
ILPGKLEICSDDQGNLSPSRETSVDDGLGSQYPLKKDSSGDQFLSVPSPFTWSKPKPGHTPIFRTSSLPP
LDWPLPTHFGQCELKIEVQPKTHHRAHYETEGSRGAVKASTGGHPVVKLLGYSEKPINLQMFIGTADDRY
LRPHAFYQVHRITGKTVATASQEIIIASTKVLEIPLLPENNMSASIDCAGILKLRNSDIELRKGETDIGR
KNTRVRLVFRVHIPQPSGKVLSLQIASIPVECSQRSAQELPHIEKYSINSCSVNGGHEMIVTGSNFLPES
KIIFLEKGQDGRPHWEAEGKIIREKCQGAHIVLEVPPYHNPAVTSAVQVHFYLCNGKRKKSQSQRFTYTP
VLMKQEQREDTDLPSVPSLPVPHSAQAQRPSSETGHPHDRAMSAPGSLLCQVQPAYTSMVASTHLPQLQC
RDEGAGKEQHIATSSVMHQPFQVTPTSPIGSSYQSIQTSMYNGPTCLPVNPASSQEFDPVLFQQDAALSS
LVNLGCQPLSPIPFHSSNSDATGHLLAHSPHSVQTPPHLQSMGYHCSNAGQTALSSPVADQITGQPSSHL
QPITYCPSHPGSATAASPAASHPLASSPISGPSSPQLQPMPYQSPSSGTASSPSPTTRMHSGQHSTQAQS
TGQGGLSVPSSLVCHSLCDPASFPPGGATVSIKPEPEDQEPNFATIGLQDITLDDVNEIIGRDMSQISVS
QATEVMRDTPLPGPASPDLMTSHSAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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