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Report for CCDS22622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22622.1 Public Mus musculus 8 Lcat 23 108 98 CCDS HistoryNCBI Gene:16816Re-query CCDS DB by CCDS ID:22622.1Re-query CCDS DB by GeneID:16816See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038896.7 ENSMUSP00000038232.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038896.7Link to Ensembl Protein Viewer:ENSMUSP00000038232.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038896Re-query CCDS DB by Protein ID:ENSMUSP00000038232
Original member Current member NCBI NM_008490.2 NP_032516.2 Accepted alive Link to Nucleotide Sequence:NM_008490.2Link to Protein Sequence:NP_032516.2Re-query CCDS DB by Nucleotide ID:NM_008490Re-query CCDS DB by Protein ID:NP_032516Link to BLAST:NP_032516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032516.2 438 P16301 438 100% 0 0

Chromosomal Locations for CCDS 22622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105939572 105940140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105941639 105941863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105941946 105942041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105942138 105942253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105942331 105942487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105943225 105943378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGGGCTGCCTGGCTCCCCATGGCAGCGGGTGCTGTTGCTGTTGGGGCTACTGCTCCCTCCTGCCACCC
CCTTCTGGCTCCTCAATGTGCTCTTCCCCCCGCACACCACGCCCAAGGCTGAACTCAGTAACCACACACG
GCCTGTCATCCTCGTGCCTGGCTGCTTGGGGAATCGGCTAGAAGCCAAGCTGGATAAACCAGATGTGGTG
AACTGGATGTGCTACCGTAAGACAGAGGACTTCTTCACCATCTGGCTGGATTTCAACTTGTTTCTCCCCC
TCGGGGTGGACTGCTGGATTGATAATACCAGGATTGTCTACAACCACAGCTCTGGGCGCGTGTCCAATGC
CCCTGGTGTCCAGATCCGTGTCCCTGGCTTTGGCAAGACCGAATCTGTTGAGTACGTGGATGACAACAAG
CTAGCAGGCTACCTGCACACACTGGTGCAGAATCTGGTTAACAACGGATATGTGCGGGATGAGACAGTGC
GGGCCGCACCCTATGACTGGCGTCTGGCACCCCACCAGCAGGATGAATACTACAAGAAGCTGGCTGGCCT
GGTAGAGGAGATGTATGCCGCTTATGGGAAGCCTGTCTTCCTCATTGGGCATAGCCTTGGCTGTCTGCAT
GTGCTCCACTTCTTACTGCGGCAGCCTCAGTCCTGGAAGGACCACTTCATTGATGGTTTTATCTCTCTCG
GGGCTCCGTGGGGTGGTTCCATCAAGGCCATGCGGATCCTGGCCTCAGGTGACAACCAGGGCATCCCCAT
CCTGTCCAACATAAAGCTGAAAGAGGAGCAGCGCATAACCACGACTTCCCCCTGGATGCTCCCAGCCCCT
CACGTGTGGCCTGAAGACCATGTGTTCATTTCCACACCAAACTTCAACTACACCGTCCAAGACTTTGAGC
GTTTTTTCACAGATCTGCATTTTGAAGAAGGCTGGCACATGTTTCTTCAGTCTCGTGACCTACTGGAGCG
CCTCCCCGCACCTGGTGTAGAAGTATATTGTCTCTACGGTGTGGGCAGACCCACACCCCACACCTACATC
TATGACCACAACTTCCCCTACAAAGACCCCGTGGCTGCACTCTATGAAGATGGGGACGACACCGTAGCCA
CCCGCAGCACTGAGCTCTGTGGCCAGTGGCAGGGCCGCCAGTCGCAGCCCGTACATTTGCTGCCCATGAA
CGAGACAGATCACCTCAACATGGTCTTCAGCAATAAGACACTGGAGCATATCAATGCCATCCTACTGGGT
GCCTACCGCACTCCTAAGTCGCCAGCTGCCAGCCCAAGTCCCCCACCCCCTGAATAA

Translation (438 aa):
MGLPGSPWQRVLLLLGLLLPPATPFWLLNVLFPPHTTPKAELSNHTRPVILVPGCLGNRLEAKLDKPDVV
NWMCYRKTEDFFTIWLDFNLFLPLGVDCWIDNTRIVYNHSSGRVSNAPGVQIRVPGFGKTESVEYVDDNK
LAGYLHTLVQNLVNNGYVRDETVRAAPYDWRLAPHQQDEYYKKLAGLVEEMYAAYGKPVFLIGHSLGCLH
VLHFLLRQPQSWKDHFIDGFISLGAPWGGSIKAMRILASGDNQGIPILSNIKLKEEQRITTTSPWMLPAP
HVWPEDHVFISTPNFNYTVQDFERFFTDLHFEEGWHMFLQSRDLLERLPAPGVEVYCLYGVGRPTPHTYI
YDHNFPYKDPVAALYEDGDDTVATRSTELCGQWQGRQSQPVHLLPMNETDHLNMVFSNKTLEHINAILLG
AYRTPKSPAASPSPPPPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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