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Report for CCDS22510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22510.1 Public Mus musculus 8 Brd7 23 108 98 CCDS HistoryNCBI Gene:26992Re-query CCDS DB by CCDS ID:22510.1Re-query CCDS DB by GeneID:26992See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034085.7 ENSMUSP00000034085.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034085.7Link to Ensembl Protein Viewer:ENSMUSP00000034085.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034085Re-query CCDS DB by Protein ID:ENSMUSP00000034085
Original member NCBI NM_012047.2 NP_036177.1 Updated not alive Link to Nucleotide Sequence:NM_012047.2Link to Protein Sequence:NP_036177.1Re-query CCDS DB by Nucleotide ID:NM_012047Re-query CCDS DB by Protein ID:NP_036177
Current member NCBI NM_012047.3 NP_036177.1 Accepted alive Link to Nucleotide Sequence:NM_012047.3Link to Protein Sequence:NP_036177.1Re-query CCDS DB by Nucleotide ID:NM_012047Re-query CCDS DB by Protein ID:NP_036177Link to BLAST:NP_036177.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036177.1 651 O88665 651 100% 0 0

Chromosomal Locations for CCDS 22510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 88332488 88332543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88332881 88333024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88333738 88333881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88334105 88334216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88337081 88337137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88339409 88339520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88342735 88342870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88343582 88343689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88345149 88345224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88345830 88345953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88346874 88347058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88351800 88351910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88354629 88354773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88357537 88357594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88357900 88358029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88361502 88361710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88361906 88361954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1956 nt):
ATGGGCAAGAAGCACAAGAAGCACAAGTCGGACCGCCACTTCTACGAGGAGTACGTGGAGAAGCCCCTGA
AGCTGGTCCTCAAAGTCGGGGGGAGCGAGGTCACCGAGCTCTCCACGGGCAGCTCCGGGCACGACTCCAG
CCTCTTCGAAGACAGAAGCGACCATGACAAACACAAGGACAGAAAACGGAAAAAGAGGAAGAAAGGCGAG
AAGCAGGCTCCGGGGGAAGAGAAGGGGAGAAAACGGAGAAGAGTCAAGGAGGATAAAAAGAAGCGGGATC
GAGACCGTGCAGAGAATGAGGTGGACAGAGATCTCCAGTGTCATGTCCCTATAAGATTAGACTTACCTCC
TGAGAAGCCTCTTACAAGCTCGTTAGCCAAACAAGAAGAAGTAGAACAGACACCCCTTCAGGAAGCTTTG
AATCAGCTCATGAGACAATTGCAAAGAAAAGACCCAAGTGCTTTCTTTTCATTTCCTGTGACGGATTTTA
TTGCGCCTGGCTACTCCATGATTATTAAACACCCAATGGATTTTAGTACCATGAAAGAAAAGATCAAGAA
TAACGACTACCAGTCCATAGAAGAACTAAAGGATAACTTCAAGCTAATGTGTACTAATGCAATGATTTAC
AATAAGCCAGAGACCATTTATTATAAAGCTGCAAAGAAGCTGTTGCACTCAGGGATGAAAATTCTCAGTC
AGGAGAGAATTCAGAGCCTGAAGCAGAGTATAGACTTCATGTCAGACTTGCAGAAAACTCGGAAGCAGAA
AGAACGAACAGATGCCTGTCAGAGTGGGGAGGACAGCGGCTGCTGGCAGCGCGAGAGGGAAGACTCTGGA
GATGCTGAAACACAGGCCTTCAGAAGCCCCGCTAAGGACAATAAAAGGAAAGACAAAGATGTGCTTGAAG
ACAAATGGAGAAGCAGCAACTCAGAAAGGGAGCATGAGCAGATTGAGCGCGTTGTCCAGGAGTCAGGAGG
CAAGCTAACACGGCGGCTGGCAAACAGTCAGTGTGAATTTGAAAGAAGAAAACCAGATGGGACAACAACA
CTGGGGCTTCTCCATCCTGTGGATCCCATTGTGGGAGAGCCAGGCTACTGCCCTGTGAGATTGGGGATGA
CAACTGGAAGACTGCAGTCTGGAGTGAACACTCTGCAGGGGTTCAAAGAGGATAAAAGGAACAGAGTAAC
CCCAGTATTATACTTGAATTATGGACCCTACAGTTCTTATGCCCCACATTATGACTCTACATTTGCCAAT
ATTAGCAAAGATGATTCTGATTTAATCTACTCAACATATGGGGAAGACTCTGACCTTCCAAACAATTTCA
GCATCTCTGAGTTTTTGGCCACATGCCAAGATTACCCGTATGTTATGGCAGATAGTTTACTGGATGTTCT
AACAAAAGGAGGACATTCCAGGAGCCTGCAGGACTTGGACATGTCATCTCCTGAAGATGAAGGCCAGACC
AGAGCATTGGACACAGCAAAAGAAGCAGAGATTACACAAATAGAGCCAACAGGGCGTTTGGAGTCCAGCA
GTCAGGACAGGCTCACAGCACTGCAAGCTGTAACAACCTTTGGTGCTCCAGCTGAAGTCTTTGACTCCGA
AGAGGCTGAGGTGTTCCAGAGGAAGCTTGATGAGACGACAAGATTGCTCAGGGAGCTCCAGGAGGCACAG
AATGAGCGACTGAGCACTAGGCCTCCTCCCAATATGATCTGTCTCCTGGGTCCTTCTTACAGAGAAATGT
ACCTTGCTGAACAAGTGACCAATAACCTCAAAGAACTCACACAGCAAGTGACTCCAGGTGATGTTGTAAG
CATACACGGAGTGCGAAAAGCAATGGGGATTTCTGTTCCTTCCCCCATCGTGGGAAACAGCTTCGTAGAT
TTGACAGGAGAGTGTGAAGAACCTAAGGAGACCAGCACTGCTGAGTGTGGGCCTGACGCGAGCTGA

Translation (651 aa):
MGKKHKKHKSDRHFYEEYVEKPLKLVLKVGGSEVTELSTGSSGHDSSLFEDRSDHDKHKDRKRKKRKKGE
KQAPGEEKGRKRRRVKEDKKKRDRDRAENEVDRDLQCHVPIRLDLPPEKPLTSSLAKQEEVEQTPLQEAL
NQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY
NKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMSDLQKTRKQKERTDACQSGEDSGCWQREREDSG
DAETQAFRSPAKDNKRKDKDVLEDKWRSSNSEREHEQIERVVQESGGKLTRRLANSQCEFERRKPDGTTT
LGLLHPVDPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNRVTPVLYLNYGPYSSYAPHYDSTFAN
ISKDDSDLIYSTYGEDSDLPNNFSISEFLATCQDYPYVMADSLLDVLTKGGHSRSLQDLDMSSPEDEGQT
RALDTAKEAEITQIEPTGRLESSSQDRLTALQAVTTFGAPAEVFDSEEAEVFQRKLDETTRLLRELQEAQ
NERLSTRPPPNMICLLGPSYREMYLAEQVTNNLKELTQQVTPGDVVSIHGVRKAMGISVPSPIVGNSFVD
LTGECEEPKETSTAECGPDAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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