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Report for CCDS22458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22458.1 Public Mus musculus 8 Ptger1 23 108 98 CCDS HistoryNCBI Gene:19216Re-query CCDS DB by CCDS ID:22458.1Re-query CCDS DB by GeneID:19216See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019608.6 ENSMUSP00000019608.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019608.6Link to Ensembl Protein Viewer:ENSMUSP00000019608.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019608Re-query CCDS DB by Protein ID:ENSMUSP00000019608
Original member Current member NCBI NM_013641.3 NP_038669.1 Accepted alive Link to Nucleotide Sequence:NM_013641.3Link to Protein Sequence:NP_038669.1Re-query CCDS DB by Nucleotide ID:NM_013641Re-query CCDS DB by Protein ID:NP_038669Link to BLAST:NP_038669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038669.1 405 P35375 405 100% 0 0

Chromosomal Locations for CCDS 22458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83667896 83668846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83669267 83669533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGAGCCCCTGCGGGCTTAACCTGAGCCTAGCGGATGAGGCAGCAACGTGCGCAACACCCAGGCTCCCCA
ATACATCTGTGGTGCTGCCAACAGGCGATAATGGCACATCACCAGCGCTGCCTATCTTCTCCATGACGCT
GGGTGCTGTGTCCAACGTGCTGGCGCTGGCGCTGCTGGCCCAGGTTGCAGGCCGAATGCGGCGGCGCCGC
TCGGCTGCCACCTTCCTGTTGTTCGTCGCCAGCCTGCTTGCCATCGACCTAGCAGGCCATGTGATCCCGG
GCGCCCTGGTGCTTCGCCTGTATACTGCGGGGCGTGCGCCTGCTGGAGGGGCGTGTCATTTCCTGGGTGG
CTGCATGGTCTTCTTCGGCCTGTGCCCACTTTTGCTTGGCTGTGGCATGGCCGTAGAGCGCTGTGTGGGT
GTCACGCAGCCACTGATCCACGCGGCGCGCGTATCTGTGGCCCGCGCACGCCTGGCACTAGCCGTGCTGG
CTGCCATGGCTTTGGCAGTGGCGCTGCTGCCACTGGTACACGTGGGTCGCTACGAGTTACAGTACCCTGG
CACCTGGTGTTTTATTAGCCTTGGGCCTCGTGGAGGTTGGCGCCAGGCGTTGCTTGCCGGCCTCTTCGCC
GGCCTTGGCCTGGCCGCGCTCCTTGCGGCATTAGTGTGCAATACGCTCAGCGGCCTGGCGCTCCTCCGTG
CCCGCTGGAGACGGCGTCGCTCTCGACGATTCCGAAAGACCGCAGGTCCCGATGATCGCCGGCGCTGGGG
ATCTCGTGGACCCCGCTTGGCCTCCGCCTCGTCTGCCTCATCCATCACTTCAGCCACAGCCACCCTCCGC
AGCTCTCGGGGCGGCGGCTCCGCGCGCAGGGTTCACGCACACGATGTGGAAATGGTGGGCCAGCTCGTGG
GCATCATGGTGGTGTCGTGCATCTGCTGGAGCCCCCTGCTGGTGTTGGTGGTGTTGGCCATCGGGGGCTG
GAACTCTAACTCCCTGCAGCGGCCACTCTTTCTGGCTGTACGCCTCGCATCGTGGAACCAGATCCTGGAC
CCATGGGTGTACATCCTGCTGCGCCAGGCCATGCTGCGCCAACTGCTTCGCCTCCTACCCCTGAGGGTCA
GTGCCAAGGGTGGTCCAACGGAGCTGGGCCTAACCAAGAGTGCCTGGGAAGCCAGTTCACTGCGTAGTTC
CCGGCACAGTGGTTTCAGTCACCTCTGA

Translation (405 aa):
MSPCGLNLSLADEAATCATPRLPNTSVVLPTGDNGTSPALPIFSMTLGAVSNVLALALLAQVAGRMRRRR
SAATFLLFVASLLAIDLAGHVIPGALVLRLYTAGRAPAGGACHFLGGCMVFFGLCPLLLGCGMAVERCVG
VTQPLIHAARVSVARARLALAVLAAMALAVALLPLVHVGRYELQYPGTWCFISLGPRGGWRQALLAGLFA
GLGLAALLAALVCNTLSGLALLRARWRRRRSRRFRKTAGPDDRRRWGSRGPRLASASSASSITSATATLR
SSRGGGSARRVHAHDVEMVGQLVGIMVVSCICWSPLLVLVVLAIGGWNSNSLQRPLFLAVRLASWNQILD
PWVYILLRQAMLRQLLRLLPLRVSAKGGPTELGLTKSAWEASSLRSSRHSGFSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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