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Report for CCDS22437.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22437.1 Public Mus musculus 8 Smad1 23 108 98 CCDS HistoryNCBI Gene:17125Re-query CCDS DB by CCDS ID:22437.1Re-query CCDS DB by GeneID:17125See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22437.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066091.13 ENSMUSP00000071035.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066091.13Link to Ensembl Protein Viewer:ENSMUSP00000071035.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000066091Re-query CCDS DB by Protein ID:ENSMUSP00000071035
Original member Current member NCBI NM_008539.4 NP_032565.2 Accepted alive Link to Nucleotide Sequence:NM_008539.4Link to Protein Sequence:NP_032565.2Re-query CCDS DB by Nucleotide ID:NM_008539Re-query CCDS DB by Protein ID:NP_032565Link to BLAST:NP_032565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032565.2 465 P70340 465 100% 0 0

Chromosomal Locations for CCDS 22437.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 79339649 79339792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79343654 79343910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79349591 79349812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79353330 79353446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79356212 79356469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79371784 79372183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGAATGTGACCAGCTTGTTTTCATTCACAAGTCCAGCTGTGAAGAGACTCCTTGGGTGGAAACAGGGCG
ATGAAGAAGAGAAATGGGCAGAGAAAGCTGTGGACGCTTTGGTGAAGAAACTGAAGAAGAAGAAAGGGGC
CATGGAAGAGCTGGAGAAGGCCCTGAGCTGCCCTGGACAGCCGAGTAACTGCGTCACCATTCCTCGCTCC
CTGGATGGCAGGTTGCAGGTGTCCCACCGGAAGGGACTACCTCATGTCATTTATTGCCGTGTGTGGCGCT
GGCCCGACCTCCAGAGCCACCATGAACTGAAGCCTCTGGAATGCTGTGAGTTCCCATTTGGTTCCAAGCA
GAAGGAGGTCTGCATCAACCCCTACCACTATAAGCGAGTGGAGAGCCCGGTTCTCCCGCCGGTGCTGGTT
CCGAGGCACAGCGAGTACAATCCTCAGCACAGCCTTCTGGCTCAGTTCCGCAACCTGGGACAAAATGAGC
CTCACATGCCACTGAACGCCACGTTCCCAGACTCTTTCCAGCAGCCCAACAGCCACCCGTTCCCCCACTC
CCCCAACAGCAGCTACCCCAACTCTCCTGGCGGCAGCAGCAGCACCTACCCTCACTCCCCAACCAGCTCA
GACCCGGGCAGCCCTTTTCAGATGCCAGCTGACACACCCCCACCTGCTTACCTGCCTCCTGAAGACCCCA
TGGCCCAGGATGGCTCTCAGCCCATGGACACGAACATGATGGCGCCTCCACTGCCCGCTGAAATCAGCAG
AGGAGATGTTCAGGCAGTTGCTTACGAGGAACCAAAACACTGGTGCTCTATTGTGTACTATGAGCTCAAC
AACCGTGTGGGTGAAGCGTTCCACGCCTCGTCCACCAGCGTGCTGGTGGATGGTTTCACAGATCCGTCCA
ACAATAAGAACCGCTTCTGCCTTGGCTTGCTCTCCAACGTTAACCGGAATTCCACTATTGAAAACACCAG
GCGACATATTGGGAAAGGAGTCCACCTTTATTACGTTGGAGGAGAGGTGTATGCGGAATGCCTCAGTGAC
AGCAGCATCTTCGTGCAGAGCCGGAACTGCAACTACCACCACGGCTTTCACCCCACCACCGTCTGCAAGA
TCCCCAGCGGGTGCAGCTTGAAAATCTTCAACAACCAAGAGTTTGCTCAGCTACTGGCGCAGTCTGTGAA
CCACGGGTTCGAGACCGTGTATGAACTCACCAAAATGTGCACTATTCGGATGAGCTTCGTGAAGGGTTGG
GGAGCCGAATACCACCGGCAGGATGTTACCAGCACCCCCTGCTGGATTGAGATCCATCTGCATGGCCCTC
TCCAGTGGCTGGATAAGGTTCTGACCCAGATGGGCTCACCCCACAATCCTATTTCATCCGTGTCTTAA

Translation (465 aa):
MNVTSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIPRS
LDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKRVESPVLPPVLV
PRHSEYNPQHSLLAQFRNLGQNEPHMPLNATFPDSFQQPNSHPFPHSPNSSYPNSPGGSSSTYPHSPTSS
DPGSPFQMPADTPPPAYLPPEDPMAQDGSQPMDTNMMAPPLPAEISRGDVQAVAYEEPKHWCSIVYYELN
NRVGEAFHASSTSVLVDGFTDPSNNKNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSD
SSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFETVYELTKMCTIRMSFVKGW
GAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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