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Report for CCDS22410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22410.1 Public Mus musculus 8 Hsh2d 23 108 98 CCDS HistoryNCBI Gene:209488Re-query CCDS DB by CCDS ID:22410.1Re-query CCDS DB by GeneID:209488See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22410.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072097.13 ENSMUSP00000071970.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072097.13Link to Ensembl Protein Viewer:ENSMUSP00000071970.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072097Re-query CCDS DB by Protein ID:ENSMUSP00000071970
Original member Current member EBI ENSMUST00000165324.1 ENSMUSP00000127575.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165324.1Link to Ensembl Protein Viewer:ENSMUSP00000127575.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165324Re-query CCDS DB by Protein ID:ENSMUSP00000127575
Original member Current member NCBI NM_197944.1 NP_922935.1 Accepted alive Link to Nucleotide Sequence:NM_197944.1Link to Protein Sequence:NP_922935.1Re-query CCDS DB by Nucleotide ID:NM_197944Re-query CCDS DB by Protein ID:NP_922935Link to BLAST:NP_922935.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_922935.1 334 Q6VYH9 334 100% 0 0

Chromosomal Locations for CCDS 22410.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72193461 72193585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72196796 72196885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72197739 72197904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72198368 72198487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72200277 72200780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCAGAAGCCAGGAGGCTGCCCCCACCACTACCTCCTCGGCTGGACTGGTTTGTGCACACCCAGGCGG
ACCTGCTAGCCCAATCCGGGATCCCCGAGTGGTTCCATGGCACCATCTCCCGAGAGGCTGCTGAGAACAT
GTTGGAGTCACAACCCCTGGGGACTTTTCTTATCCGAGTCAGCCACAGCCATGTGGGCTACACCCTTTCC
TACAAAGCCCAGACTTGCTGCCGTCACTTCATGGTGAAACTTTCAGAAGATGGGACTTGTGCCTTCGCTG
GGGACCACATGACCCACGCCTCTCTGCATGCCCTGGTCACCTTCCACCAACAAAAGCCTATTCGGCCATT
CGGGGAGCTGTTGACCCAGGCCTGCGGGCAGGAGGATCCAGCAAACGTGGACTATGAGGATCTCTTCCTA
TACTCAAATGCCCTGGTTCAGGATGCTGAAAGCCAAATTCTGAGAACGGAAGTTCAAAGGTCTTCCTGCC
CACCTGAGGAGGCTTCTGAAAGGAAGCCATCCACAACAACTAAAGGAGAATTCGCATCAGCTTCCTGCTC
CCCAAAAGCCCTTTTCGAGGATTCTGGACAGAAACTGTGGAAGAACCTGAGGTCCCTACCTCAGACTAGC
CAGAGGGTGAAACAGCGACTCACTTCACACCTGTTGGCCATGAACCTGCTGGGGGATGCCAGGCAAGTGG
CACAGCAGCACCACAGCCCTGTGACTCGAGCATTCAGTTGGGACAGTACTAGCCACTCCGAGGACTCCTG
TGCAGCCACCACGTCTCTTCAAAACCCTGCAGAACCCCAGGCCCTGAGAGGCAGAGAAGCCACCTTCAGG
GACTCCAGGCCTGCCAGCTGGAGGAAGGCATTCTCAGGGGTCAAAGCCTGGCGTGGAAAGGTGGTAAGGG
CCCTGTCAGCCCAGGAGCCTGTGGACTTTCCAGAAGCCCAGGGCTGGTTGCCTGAGGAATACCTTCCACC
ACCACCTTTCGCCCCTGGGTACTGA

Translation (334 aa):
MAEARRLPPPLPPRLDWFVHTQADLLAQSGIPEWFHGTISREAAENMLESQPLGTFLIRVSHSHVGYTLS
YKAQTCCRHFMVKLSEDGTCAFAGDHMTHASLHALVTFHQQKPIRPFGELLTQACGQEDPANVDYEDLFL
YSNALVQDAESQILRTEVQRSSCPPEEASERKPSTTTKGEFASASCSPKALFEDSGQKLWKNLRSLPQTS
QRVKQRLTSHLLAMNLLGDARQVAQQHHSPVTRAFSWDSTSHSEDSCAATTSLQNPAEPQALRGREATFR
DSRPASWRKAFSGVKAWRGKVVRALSAQEPVDFPEAQGWLPEEYLPPPPFAPGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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