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Report for CCDS22385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22385.1 Public Mus musculus 8 Slc5a5 23 108 98 CCDS HistoryNCBI Gene:114479Re-query CCDS DB by CCDS ID:22385.1Re-query CCDS DB by GeneID:114479See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22385.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000809.2 ENSMUSP00000000809.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000809.2Link to Ensembl Protein Viewer:ENSMUSP00000000809.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000000809Re-query CCDS DB by Protein ID:ENSMUSP00000000809
Original member Current member NCBI NM_053248.2 NP_444478.2 Accepted alive Link to Nucleotide Sequence:NM_053248.2Link to Protein Sequence:NP_444478.2Re-query CCDS DB by Nucleotide ID:NM_053248Re-query CCDS DB by Protein ID:NP_444478Link to BLAST:NP_444478.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444478.2 618 Q99PN0 618 99.8382% 0 1

Chromosomal Locations for CCDS 22385.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70883864 70883968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70884921 70885036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70886030 70886154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70887694 70887875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70887954 70888040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70888381 70888451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70888523 70888635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70888826 70888914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70889340 70889469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70889567 70889707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70890217 70890371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70891114 70891181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70891278 70891329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70891652 70891717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70892305 70892661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGAGGGCGCGGAGGCAGGGGCCCGGGCCACCTTCGGCCCCTGGGACTACGGCGTGTTCGCGACCATGC
TGCTGGTGTCCACGGGCATCGGTCTGTGGGTCGGCCTGGCCCGCGGCGGCCAGCGCAGCGCCGACGACTT
CTTCACCGGGGGCCGGCAGCTGGCGGCAGTGCCTGTGGGGCTGTCGCTGGCCGCTAGCTTCATGTCGGCT
GTGCAGGTGCTCGGGGTCCCCGCGGAGGCAGCGCGCTACGGTCTCAAGTTTCTGTGGATGTGCGTGGGCC
AGTTGCTCAATTCGCTGCTCACAGCCTTGCTCTTCTTGCCGATCTTCTACCGCCTGGGCCTTACCAGCAC
CTACCAGTACCTAGAACTGCGCTTCAGCCGAGCGGTCCGGCTCTGCGGGACGCTGCAGTACTTGGTGGCC
ACGATGCTGTATACTGGCATCGTGATCTACGCACCTGCGCTCATCCTGAACCAAGTGACCGGGTTGGACA
TCTGGGCATCGCTCCTGTCCACAGGAATCATCTGCACCTTGTACACGACCGTGGGTGGTATGAAGGCCGT
GGTCTGGACAGATGTGTTCCAGGTTGTGGTAATGCTCGTCGGCTTCTGGGTGATCCTGGCTCGAGGTGTC
ATGCTCATGGGGGGCCCCTGGAACGTGCTCAGTCTCGCTCAAAACCATTCCCGGATCAACCTGATGGACT
TTGACCCTGACCCTCGGAGCCGCTACACCTTCTGGACATTTGTAGTAGGTGGCTCCCTGGTGTGGCTCTC
CATGTATGGTGTGAACCAAGCCCAGGTGCAGCGTTATGTGGCCTGTCACACGGAGAGAAAGGCCAAGCTT
GCCCTGCTTGTCAACCAGCTTGGCCTCTTCCTGATTGTGGCTAGTGCAGCTTGCTGTGGAATTGTCATGT
TTGTCTACTACAAGGACTGCGACCCCCTCCTCACAGGCCGCATCGCAGCCCCCGATCAGTACATGCCATT
GCTCGTGTTGGACATTTTTGAGGATCTGCCCGGAGTCCCCGGGCTCTTCCTGGCCTGTGCCTACAGTGGC
ACCCTCAGCACCGCGTCCACCAGTATCAACGCTATGGCAGCTGTAACTGTGGAAGACCTCATCAAGCCCA
GGATGCCTAGCCTGGCACCCCGGAAGCTGGTTTTCATCTCTAAAGGGCTCTCATTCATCTATGGCTCAAC
CTGCCTCACTGTGGCTGCTCTGTCCTCGCTGCTGGGAGGTGGGGTCCTCCAGGGCTCTTTCACCGTGATG
GGTGTCATCAGTGGGCCTCTCCTTGGCGCTTTCACCCTCGGGATGCTGCTCCCAGCCTGCAACACGCCAG
GCGTCCTCTCCGGGCTGACAGCAGGCTTAGCTGTATCCCTGTGGGTGGCCGTGGGGGCCACGCTGTACCC
GCCTGGAGAGCAGACCATGGGGGTGCTGCCCACCTCGGCTGCGGGATGCACCAATGCCTCTGTCCTCCCG
AGCCCACCCGGAGCTGCCAACACTTCCAGAGGGATCCCCAGTTCTGGAATGGACTCGGGCCGCCCAGCCT
TTGCCGACACCTTTTATGCTGTCTCCTATCTCTACTACGGGGCTCTGGGTACTTTGACCACTATGCTTTG
TGGTGCTCTCATCAGCTACCTAACTGGCCCCACCAAGCGCAGCTCCCTGGGCCCCGGATTACTGTGGTGG
GACCTCGCTCGGCAGACAGCATCTGTGGCCCCAAAGGAGGACACCACCACCCTGGAGGACAGCCTGGTTA
AGGGACCGGAAGACATCCCTGCTGCGACCAAGAAGCCCCCTGGCTTCAGGCCAGAAGCCGAGACCCACCC
CCTGTATCTGGGGCACGATGCTGAGACCAACCTCTGA

Translation (618 aa):
MEGAEAGARATFGPWDYGVFATMLLVSTGIGLWVGLARGGQRSADDFFTGGRQLAAVPVGLSLAASFMSA
VQVLGVPAEAARYGLKFLWMCVGQLLNSLLTALLFLPIFYRLGLTSTYQYLELRFSRAVRLCGTLQYLVA
TMLYTGIVIYAPALILNQVTGLDIWASLLSTGIICTLYTTVGGMKAVVWTDVFQVVVMLVGFWVILARGV
MLMGGPWNVLSLAQNHSRINLMDFDPDPRSRYTFWTFVVGGSLVWLSMYGVNQAQVQRYVACHTERKAKL
ALLVNQLGLFLIVASAACCGIVMFVYYKDCDPLLTGRIAAPDQYMPLLVLDIFEDLPGVPGLFLACAYSG
TLSTASTSINAMAAVTVEDLIKPRMPSLAPRKLVFISKGLSFIYGSTCLTVAALSSLLGGGVLQGSFTVM
GVISGPLLGAFTLGMLLPACNTPGVLSGLTAGLAVSLWVAVGATLYPPGEQTMGVLPTSAAGCTNASVLP
SPPGAANTSRGIPSSGMDSGRPAFADTFYAVSYLYYGALGTLTTMLCGALISYLTGPTKRSSLGPGLLWW
DLARQTASVAPKEDTTTLEDSLVKGPEDIPAATKKPPGFRPEAETHPLYLGHDAETNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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