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Report for CCDS22364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22364.1 Public Mus musculus 8 Ddx49 23 108 98 CCDS HistoryNCBI Gene:234374Re-query CCDS DB by CCDS ID:22364.1Re-query CCDS DB by GeneID:234374See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008004.9 ENSMUSP00000008004.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008004.9Link to Ensembl Protein Viewer:ENSMUSP00000008004.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000008004Re-query CCDS DB by Protein ID:ENSMUSP00000008004
Original member Current member NCBI NM_001024922.2 NP_001020093.2 Accepted alive Link to Nucleotide Sequence:NM_001024922.2Link to Protein Sequence:NP_001020093.2Re-query CCDS DB by Nucleotide ID:NM_001024922Re-query CCDS DB by Protein ID:NP_001020093Link to BLAST:NP_001020093.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020093.2 480 Q4FZF3 480 100% 0 0

Chromosomal Locations for CCDS 22364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70293508 70293687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70293828 70293899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70293999 70294087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70294687 70294761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70295367 70295464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70295575 70295651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70296383 70296458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70296903 70297043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70297131 70297318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70297876 70297997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70298081 70298166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70300979 70301102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70302323 70302437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGCGGGGTTCGCTGAGATCGGGTTGTCGTCGTGGCTGGTAGAACAGTGTCGACAGCTGGGGTTGAAGC
AGCCCACGCCGGTGCAGCTCGGGTGCATTCCGGCCATCCTGGAAGGTCGGGACTGCTTGGGCTGTGCAAA
AACAGGAAGTGGCAAGACAGCAGCCTTTGTGCTTCCCATCTTGCAGAAGCTGTCTGAGGACCCTTATGGC
ATCTTCTGCTTGGTTCTGACACCCACCAGAGAGCTGGCCTACCAGATCGCTGAGCAGTTCCGGGTGCTGG
GGAAGCCTCTGGGTCTGAAGGACTGCATCATTGTTGGTGGAATGGACATGGTGGCTCAGGCGCTGGAGCT
CTCTCGGAAGCCACATGTAGTGATTGCCACCCCTGGGCGCCTGGCTGACCACCTGCGCAGTTCCAACACT
TTCAACATGAAGAAAATCCAATTCCTGGTGATGGATGAGGCCGACAGGCTGCTGGAGCAGGGTTGCACCG
ACTTCACCACAGACCTGGAGACCATCCTGGCAGCCGTTCCAGCACGAAGGCAAACGCTGCTGTTCAGTGC
CACGCTGACTGACACACTCAAGGAGCTGCAGGGCCTGGCCACCAACGAGCCCTTCTTTTGGGAGGCACAG
GCCACAGTCCGCACAGTGGAGCAGCTTGATCAGCGCTATTTGTTGGTACCGGAGAAGGTGAAGGACGCCT
ACCTGGTTCACCTAGTCCAGACCTTCCAGGACCAGCTGGAGGACTGCTCCATCATCATCTTCACCAATAC
CTGCAAGACCTGCCAGATCCTTTGTATGATGCTTCGAAAGTTCAACTTCCCCACAGTGGCACTGCACTCC
ATGATGAAGCAGAAAGAGCGCTTTGCGGCCCTGGCCAAATTCAAGTCCAGCATCTATCGGATTCTTATTG
CCACTGACGTGGCCTCAAGGGGCCTGGACATCCCCACCGTGCAGGTGGTCATCAACCACAACACCCCTGG
GCTTCCCAAGATCTACATCCATCGGGTTGGCCGCACAGCCCGTGCAGGGAGGCAGGGGCAAGCCATCACA
CTGGTGACGCAGTATGATATCCACCTGTTGCATGCCATCGAGGAGCAGATCAAGCAGCAGCTGGCAGAGC
TGGTGGTGGAGGAGGCTGAGGTTCTACAAATCCTCACGCAGGTCAACGTAGTGCGAAGGGAGTGCGAAAT
AAAACTGGAGGCTTCGCATTTTGATGAAAAGAAAGAGATCAACAAGCGGAAACAGATGATCCTGGAGGGG
AAGGACCCAGACCTGGAGGCCAAACGCAAAGCTGAGCTGGCCAAGATCAAGCAACAAAACCGACGCTTCA
AGGAGAAAGTGGGGCAGACACTTCGGCGGCAGAAAGCAGGGAGCACTGTCCGACGGTCGCGTCCTCCCAG
ATCTCGGCCCCAAGAGCCAGCCCAGGCTGAGGCTCAGGACTGA

Translation (480 aa):
MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYG
IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNT
FNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQTLLFSATLTDTLKELQGLATNEPFFWEAQ
ATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHS
MMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAIT
LVTQYDIHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQMILEG
KDPDLEAKRKAELAKIKQQNRRFKEKVGQTLRRQKAGSTVRRSRPPRSRPQEPAQAEAQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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