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Report for CCDS22358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22358.1 Public Mus musculus 8 Ncan 23 108 98 CCDS HistoryNCBI Gene:13004Re-query CCDS DB by CCDS ID:22358.1Re-query CCDS DB by GeneID:13004See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002412.8 ENSMUSP00000002412.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002412.8Link to Ensembl Protein Viewer:ENSMUSP00000002412.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002412Re-query CCDS DB by Protein ID:ENSMUSP00000002412
Original member Current member NCBI NM_007789.3 NP_031815.2 Accepted alive Link to Nucleotide Sequence:NM_007789.3Link to Protein Sequence:NP_031815.2Re-query CCDS DB by Nucleotide ID:NM_007789Re-query CCDS DB by Protein ID:NP_031815Link to BLAST:NP_031815.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031815.2 1268 P55066 1268 99.6845% 0 4

Chromosomal Locations for CCDS 22358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70096320 70096450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70097449 70097631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70098050 70098194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70100233 70100315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70101901 70102059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70102410 70102523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70103944 70104060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70107441 70108649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70109941 70110537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70111894 70112187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70112501 70112628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70112726 70112900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70114989 70115387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70116589 70116661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3807 nt):
ATGGGGGCCGGATCTGTGTGGGCCTCAGGCCTCCTGCTGCTGTGGCTGCTTCTCCTAGTGGCTGGGGATC
AGGACACACAGGACACCACCGCCACGGAAAAGGGGCTTCGCATGCTGAAGTCAGGGTCAGGACCCGTCCG
TGCTGCCCTGGCAGAGCTAGTGGCCCTGCCCTGCTTCTTTACCCTGCAACCACGGCTAAGCTCCCTGCGA
GACATTCCTCGGATCAAGTGGACTAAGGTTCAGACTGCATCAGGCCAGCGACAGGATTTGCCAATCTTGG
TGGCCAAAGACAACGTGGTGCGTGTGGCCAAGGGCTGGCAGGGACGGGTGTCATTGCCTGCTTATCCCCG
GCACAGAGCCAATGCTACCCTTCTGCTGGGGCCACTTCGAGCAAGCGACTCTGGGCTGTATCGCTGCCAA
GTGGTAAAGGGTATCGAAGATGAGCAGGACCTGGTAACCCTGGAAGTGACAGGCGTCGTGTTCCATTATC
GGGCGGCCCGGGACCGCTATGCGCTGACCTTCGCTGAGGCCCAGGAGGCTTGTCGCCTAAGCTCTGCTAC
CATCGCTGCCCCACGGCACCTGCAGGCTGCCTTTGAAGATGGCTTTGACAACTGCGACGCGGGCTGGCTC
TCAGACCGCACGGTTCGGTACCCGATCACTCAGTCGCGTCCTGGTTGCTATGGTGACCGCAGCAGTCTCC
CGGGTGTTCGGAGCTACGGGAGACGCGACCCGCAGGAACTCTACGATGTCTACTGCTTTGCCCGCGAGCT
AGGGGGTGAAGTCTTTTACGTGGGCCCGGCCCGCCGACTGACCCTGGCGGGCGCGCGGGCACAATGTCAG
CGGCAGGGTGCAGCGCTGGCCTCGGTGGGGCAGTTGCACCTGGCCTGGCACGAGGGCCTGGACCAGTGCG
ACCCGGGCTGGCTGGCAGACGGCAGCGTGCGCTACCCCATCCAGACTCCGCGCCGGCGTTGCGGGGGCCC
CGCCCCAGGTGTGCGCACTGTGTACCGCTTCGCCAACCGCACCGGCTTTCCTGCGCCAGGAGCACGCTTC
GACGCCTACTGCTTCCGAGCTCATCACCATACAGCACAACATGGAGATTCTGAGATCCCCTCATCTGGAG
ATGAGGGGGAGATTGTGTCAGCAGAGGGGCCTCCAGGCCGAGAACTAAAGCCCAGCTTGGGGGAACAGGA
GGTGATAGCACCTGACTTCCAGGAACCTCTCATGTCCAGTGGAGAAGGCGAACCCCCAGACTTGACTTGG
ACACAAGCACCTGAGGAGACCCTTGGTTCTACTCCAGGGGGTCCCACGCTGGCCTCATGGCCCTCTTCAG
AAAAGTGGCTCTTTACGGGTGCCCCAAGCTCCATGGGTGTCTCCAGTCCCAGCGACATGGGAGTAGATAT
GGAAGCGACAACACCCTTGGGCACACAGGTAGCACCCACCCCCACGATGAGGAGGGGCCGCTTTAAAGGG
TTGAATGGTCGACACTTCCAGCAGCAGGGCCCAGAAGACCAGCTGCCTGAGGTAGCAGAGCCCAGTGCCC
AGCCTCCCACCCTGGGAGCTACTGCCAACCACATGAGGCCTTCTGCAGCCACAGAGGCTTCAGAGAGTGA
CCAGAGCCACAGTCCTTGGGCCATTCTGACCAACGAAGTGGATGAGCCAGGAGCAGGCTCTCTTGGCAGC
AGGAGTCTCCCAGAGTCCCTGATGTGGTCCCCGTCGTTGATCTCACCCAGTGTCCCAAGCACCGACAGTA
CTCCTAGCGCGAAGCCAGGGGCAGCCGAGGCACCCAGTGTGAAGTCAGCCATCCCCCACCTGCCCCGGCT
GCCCTCAGAGCCCCCTGCTCCCTCTCCCGGGCCCTCAGAGGCCCTAAGTGCTGTCTCCCTCCAGGCATCC
TCTGCTGATGGCTCCCCTGACTTCCCCATTGTAGCCATGCTTCGAGCCCCCAAACTGTGGCTTCTGCCAC
GCTCTACACTTGTCCCCAATATGACCCCAGTCCCACTGTCCCCAGCTTCTCCACTTCCCTCCTGGGTCCC
AGAAGAACAGGCTGTCAGGCCTGTCAGCCTTGGAGCGGAAGACCTCGAAACCCCATTTCAGACCACCATA
GCTGCCCCAGTTGAAGCCAGCCACAGATCCCCTGATGCAGATTCTATAGAAATCGAGGGGACCAGCTCCA
TGCGGGCTACAAAGCACCCCATCTCTGGCCCATGGGCTTCTTTGGACTCTAGTAATGTGACGATGAATCC
TGTCCCTTCTGATGCTGGCATCCTAGGGACTGAGTCTGGGGTCTTGGACTTACCAGGGAGTCCCACATCA
GGCGGACAGGCCACTGTGGAGAAGGTGCTGGCCACCTGGCTACCACTGCCTGGCCAAGGACTAGACCCTG
GCTCCCAGTCCACACCCATGGAAGCCCATGGGGTTGCCGTGAGCATGGAACCTACAGTGGCTTTGGAGGG
AGGTGCCACCGAGGGCCCTATGGAGGCCACCAGGGAGGTGGTCCCCAGCACTGCTGATGCCACTTGGGAG
TCTGAATCCAGAAGTGCCATTTCTAGCACCCACATAGCTGTGACCATGGCTAGGGCTCAGGGCATGCCCA
CACTGACCTCTACAAGCTCCGAAGGCCACCCAGAGCCTAAGGGCCAGATGGTGGCCCAGGAGTCACTGGA
GCCTCTCAACACTCTGCCTTCGCACCCCTGGTCATCCCTGGTGGTCCCCATGGATGAAGTGGCCTCAGTT
TCCTCAGGGGAACCCACAGGACTGTGGGACATACCCAGCACTCTGATACCTGTATCCTTGGGCTTGGATG
AATCAGACCTGAATGTTGTGGCTGAGAGTCCAAGCGTGAAGGGCTTCTGGGAAGAGGTGGCCAGCGGGCA
GGAAGATCCCACAGATCCCTGCGAGAACAACCCCTGCCTGCATGGGGGCACCTGCCACACCAACGGCACC
GTGTATGGCTGTAGTTGTGACCAGGGCTATGCTGGGGAGAATTGTGAAATTGACATTGATGACTGCTTAT
GCAGCCCTTGCGAGAATGGGGGCACCTGCATCGACGAGGTGAATGGTTTCATCTGCCTCTGCCTCCCCAG
CTATGGGGGCAGCCTGTGTGAGAAGGACACAGAAGGCTGCGACCGTGGCTGGCACAAATTCCAGGGACAC
TGCTACCGGTACTTTGCCCATCGCCGGGCCTGGGAGGATGCAGAGAGAGATTGCAGGCGCCGAGCTGGTC
ACCTGACAAGCGTCCATTCGCCAGAAGAGCACAAGTTCATTAACAGTTTTGGACATGAGAATTCGTGGAT
CGGCCTGAATGACCGGACAGTAGAGAGGGACTTCCAGTGGACAGACAACACAGGACTGCAATATGAGAAC
TGGAGGGAGAAGCAGCCGGATAATTTCTTCGCAGGTGGGGAGGATTGTGTGGTGATGGTGGCACATGAGA
GTGGGCGCTGGAATGATGTCCCCTGCAACTACAACCTACCCTATGTCTGCAAGAAGGGTACAGTGCTGTG
TGGTCCCCCTCCAGCAGTGGAGAATGCCTCTCTTGTTGGTGTGCGCAAGATCAAGTACAATGTCCATGCC
ACTGTGCGATACCAGTGTGATGAAGGATTCTCCCAGCACCGAGTGGCCACTATCCGCTGCCGTAACAATG
GGAAGTGGGACCGGCCTCAGATCATGTGCATCAAACCCAGGCGGTCACATCGGATGCGTAGACACCACCA
CCATCCACACCGACATCACAAGCCTCGCAAGGAGCACAGAAAACACAAGAGACACCCAGCGGAAGACTGG
GAGAAAGACGAAGGGGATTTCTGCTAA

Translation (1268 aa):
MGAGSVWASGLLLLWLLLLVAGDQDTQDTTATEKGLRMLKSGSGPVRAALAELVALPCFFTLQPRLSSLR
DIPRIKWTKVQTASGQRQDLPILVAKDNVVRVAKGWQGRVSLPAYPRHRANATLLLGPLRASDSGLYRCQ
VVKGIEDEQDLVTLEVTGVVFHYRAARDRYALTFAEAQEACRLSSATIAAPRHLQAAFEDGFDNCDAGWL
SDRTVRYPITQSRPGCYGDRSSLPGVRSYGRRDPQELYDVYCFARELGGEVFYVGPARRLTLAGARAQCQ
RQGAALASVGQLHLAWHEGLDQCDPGWLADGSVRYPIQTPRRRCGGPAPGVRTVYRFANRTGFPAPGARF
DAYCFRAHHHTAQHGDSEIPSSGDEGEIVSAEGPPGRELKPSLGEQEVIAPDFQEPLMSSGEGEPPDLTW
TQAPEETLGSTPGGPTLASWPSSEKWLFTGAPSSMGVSSPSDMGVDMEATTPLGTQVAPTPTMRRGRFKG
LNGRHFQQQGPEDQLPEVAEPSAQPPTLGATANHMRPSAATEASESDQSHSPWAILTNEVDEPGAGSLGS
RSLPESLMWSPSLISPSVPSTDSTPSAKPGAAEAPSVKSAIPHLPRLPSEPPAPSPGPSEALSAVSLQAS
SADGSPDFPIVAMLRAPKLWLLPRSTLVPNMTPVPLSPASPLPSWVPEEQAVRPVSLGAEDLETPFQTTI
AAPVEASHRSPDADSIEIEGTSSMRATKHPISGPWASLDSSNVTMNPVPSDAGILGTESGVLDLPGSPTS
GGQATVEKVLATWLPLPGQGLDPGSQSTPMEAHGVAVSMEPTVALEGGATEGPMEATREVVPSTADATWE
SESRSAISSTHIAVTMARAQGMPTLTSTSSEGHPEPKGQMVAQESLEPLNTLPSHPWSSLVVPMDEVASV
SSGEPTGLWDIPSTLIPVSLGLDESDLNVVAESPSVKGFWEEVASGQEDPTDPCENNPCLHGGTCHTNGT
VYGCSCDQGYAGENCEIDIDDCLCSPCENGGTCIDEVNGFICLCLPSYGGSLCEKDTEGCDRGWHKFQGH
CYRYFAHRRAWEDAERDCRRRAGHLTSVHSPEEHKFINSFGHENSWIGLNDRTVERDFQWTDNTGLQYEN
WREKQPDNFFAGGEDCVVMVAHESGRWNDVPCNYNLPYVCKKGTVLCGPPPAVENASLVGVRKIKYNVHA
TVRYQCDEGFSQHRVATIRCRNNGKWDRPQIMCIKPRRSHRMRRHHHHPHRHHKPRKEHRKHKRHPAEDW
EKDEGDFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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