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Report for CCDS22336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22336.1 Public Mus musculus 8 Npy1r 23 108 98 CCDS HistoryNCBI Gene:18166Re-query CCDS DB by CCDS ID:22336.1Re-query CCDS DB by GeneID:18166See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039303.6 ENSMUSP00000045530.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039303.6Link to Ensembl Protein Viewer:ENSMUSP00000045530.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039303Re-query CCDS DB by Protein ID:ENSMUSP00000045530
Original member Current member EBI ENSMUST00000212588.1 ENSMUSP00000148417.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212588.1Link to Ensembl Protein Viewer:ENSMUSP00000148417.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212588Re-query CCDS DB by Protein ID:ENSMUSP00000148417
Original member Current member NCBI NM_001358955.1 NP_001345884.1 Accepted alive Link to Nucleotide Sequence:NM_001358955.1Link to Protein Sequence:NP_001345884.1Re-query CCDS DB by Nucleotide ID:NM_001358955Re-query CCDS DB by Protein ID:NP_001345884Link to BLAST:NP_001345884.1
Original member Current member NCBI NM_010934.4 NP_035064.1 Accepted alive Link to Nucleotide Sequence:NM_010934.4Link to Protein Sequence:NP_035064.1Re-query CCDS DB by Nucleotide ID:NM_010934Re-query CCDS DB by Protein ID:NP_035064Link to BLAST:NP_035064.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345884.1 382 Q04573-1 382 100% 0 0
NP_035064.1 382 Q04573-1 382 100% 0 0

Chromosomal Locations for CCDS 22336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 66703930 66704625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66704736 66705188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGAACTCAACTCTGTTCTCCAAGGTTGAAAATCACTCAATTCACTATAATGCCTCAGAGAATTCTCCAC
TTCTGGCTTTTGAAAATGATGACTGCCACCTGCCCTTGGCTGTGATATTCACCTTGGCTCTCGCTTATGG
GGCGGTGATTATTCTTGGCGTCTCTGGAAACCTGGCATTGATCATAATCATTCTGAAACAGAAGGAGATG
AGAAATGTCACCAACATTCTGATCGTGAACCTCTCCTTCTCAGACTTGCTCGTTGCGGTCATGTGTCTCC
CGTTCACTTTTGTATATACACTGATGGACCACTGGGTCTTCGGGGAGACCATGTGCAAACTGAATCCCTT
TGTACAGTGTGTCTCCATCACAGTATCCATTTTCTCGCTGGTTCTCATCGCTGTGGAACGGCATCAGCTA
ATCATCAACCCAAGAGGGTGGAGACCAAACAATAGACATGCTTACATAGGCATTACTGTCATTTGGGTCC
TTGCAGTGGCTTCTTCTCTGCCCTTTGTGATCTATCAAATTCTGACCGACGAGCCCTTCCAAAATGTGTC
ACTTGCGGCGTTCAAGGACAAGTATGTGTGCTTTGACAAATTCCCATCTGACTCTCACAGGCTGTCTTAC
ACGACTCTCCTCCTGGTGCTGCAGTATTTCGGCCCACTCTGCTTTATATTCATATGCTACTTCAAGATAT
ACATTCGCTTGAAAAGGAGAAACAACATGATGGACAAGATCCGGGACAGTAAGTACAGGTCCAGTGAGAC
CAAGCGAATCAACATCATGCTGCTCTCCATTGTGGTCGCCTTCGCCGTCTGCTGGCTGCCCCTTACCATC
TTCAACACTGTGTTCGACTGGAACCACCAGATCATTGCCACCTGCAACCACAATCTGCTGTTTCTGCTCT
GTCACCTCACCGCCATGATCTCCACCTGCGTCAACCCCATCTTTTATGGATTCCTGAACAAAAATTTCCA
GAGAGACTTGCAGTTCTTCTTCAACTTTTGTGACTTCCGGTCTCGAGACGATGACTACGAGACCATAGCC
ATGTCTACCATGCATACGGATGTGTCCAAGACGTCTCTGAAGCAGGCTAGCCCAGTCGCATTTAAAAAAA
TCAGTATGAATGACAATGAAAAAGTCTGA

Translation (382 aa):
MNSTLFSKVENHSIHYNASENSPLLAFENDDCHLPLAVIFTLALAYGAVIILGVSGNLALIIIILKQKEM
RNVTNILIVNLSFSDLLVAVMCLPFTFVYTLMDHWVFGETMCKLNPFVQCVSITVSIFSLVLIAVERHQL
IINPRGWRPNNRHAYIGITVIWVLAVASSLPFVIYQILTDEPFQNVSLAAFKDKYVCFDKFPSDSHRLSY
TTLLLVLQYFGPLCFIFICYFKIYIRLKRRNNMMDKIRDSKYRSSETKRINIMLLSIVVAFAVCWLPLTI
FNTVFDWNHQIIATCNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQFFFNFCDFRSRDDDYETIA
MSTMHTDVSKTSLKQASPVAFKKISMNDNEKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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