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Report for CCDS22306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22306.1 Public Mus musculus 8 Vegfc 23 108 98 CCDS HistoryNCBI Gene:22341Re-query CCDS DB by CCDS ID:22306.1Re-query CCDS DB by GeneID:22341See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033919.5 ENSMUSP00000033919.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033919.5Link to Ensembl Protein Viewer:ENSMUSP00000033919.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033919Re-query CCDS DB by Protein ID:ENSMUSP00000033919
Original member Current member NCBI NM_009506.2 NP_033532.1 Accepted alive Link to Nucleotide Sequence:NM_009506.2Link to Protein Sequence:NP_033532.1Re-query CCDS DB by Nucleotide ID:NM_009506Re-query CCDS DB by Protein ID:NP_033532Link to BLAST:NP_033532.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033532.1 415 P97953-1 415 100% 0 0

Chromosomal Locations for CCDS 22306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 54077779 54077925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54156958 54157159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54159293 54159483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54169025 54169176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54180702 54180808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54181087 54181420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54185954 54186068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGCACTTGCTGTGCTTCTTGTCTCTGGCGTGTTCCCTGCTCGCCGCTGCGCTGATCCCCAGTCCGCGCG
AGGCGCCCGCCACCGTCGCCGCCTTCGAGTCGGGACTGGGCTTCTCGGAAGCGGAGCCCGACGGGGGCGA
GGTCAAGGCTTTTGAAGGCAAAGACCTGGAGGAGCAGTTGCGGTCTGTGTCCAGCGTAGATGAGCTGATG
TCTGTCCTGTACCCAGACTACTGGAAAATGTACAAGTGCCAGCTGCGGAAAGGCGGCTGGCAGCAGCCCA
CCCTCAATACCAGGACAGGGGACAGTGTAAAATTTGCTGCTGCACATTATAACACAGAGATCCTGAAAAG
TATTGATAATGAGTGGAGAAAGACTCAATGCATGCCACGTGAGGTGTGTATAGATGTGGGGAAGGAGTTT
GGAGCAGCCACAAACACCTTCTTTAAACCTCCATGTGTGTCCGTCTACAGATGTGGGGGTTGCTGCAACA
GCGAGGGGCTGCAGTGCATGAACACCAGCACAGGTTACCTCAGCAAGACGTTGTTTGAAATTACAGTGCC
TCTCTCACAAGGCCCCAAACCAGTCACAATCAGTTTTGCCAATCACACTTCCTGCCGGTGCATGTCTAAA
CTGGATGTTTACAGACAAGTTCATTCAATTATTAGACGTTCTCTGCCAGCAACATTACCACAGTGTCAGG
CAGCTAACAAGACATGTCCAACAAACTATGTGTGGAATAACTACATGTGCCGATGCCTGGCTCAGCAGGA
TTTTATCTTTTATTCAAATGTTGAAGATGACTCAACCAATGGATTCCATGATGTCTGTGGACCCAACAAG
GAGCTGGATGAAGACACCTGTCAGTGTGTCTGCAAGGGGGGGCTTCGGCCATCTAGTTGTGGACCCCACA
AAGAACTAGATAGAGACTCATGTCAGTGTGTCTGTAAAAACAAACTTTTCCCTAATTCATGTGGAGCCAA
CAGGGAATTTGATGAGAATACATGTCAGTGTGTATGTAAAAGAACGTGTCCAAGAAATCAGCCCCTGAAT
CCTGGGAAATGTGCCTGTGAATGTACAGAAAACACACAGAAGTGCTTCCTTAAAGGGAAGAAGTTCCACC
ATCAAACATGCAGTTGTTACAGAAGACCGTGTGCGAATCGACTGAAGCATTGTGATCCAGGACTGTCCTT
TAGTGAAGAAGTATGCCGCTGTGTCCCATCGTATTGGAAAAGGCCACATCTGAACTAA

Translation (415 aa):
MHLLCFLSLACSLLAAALIPSPREAPATVAAFESGLGFSEAEPDGGEVKAFEGKDLEEQLRSVSSVDELM
SVLYPDYWKMYKCQLRKGGWQQPTLNTRTGDSVKFAAAHYNTEILKSIDNEWRKTQCMPREVCIDVGKEF
GAATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTGYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSK
LDVYRQVHSIIRRSLPATLPQCQAANKTCPTNYVWNNYMCRCLAQQDFIFYSNVEDDSTNGFHDVCGPNK
ELDEDTCQCVCKGGLRPSSCGPHKELDRDSCQCVCKNKLFPNSCGANREFDENTCQCVCKRTCPRNQPLN
PGKCACECTENTQKCFLKGKKFHHQTCSCYRRPCANRLKHCDPGLSFSEEVCRCVPSYWKRPHLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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