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Report for CCDS22287.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22287.2 Public Mus musculus 8 Snx25 23 108 98 CCDS HistoryNCBI Gene:102141Re-query CCDS DB by CCDS ID:22287.2Re-query CCDS DB by GeneID:102141See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22287.2
The coding region has been updated to start at an alternate in-frame start codon that is more supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22287.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041582.14 ENSMUSP00000035785.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041582.14Link to Ensembl Protein Viewer:ENSMUSP00000035785.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041582Re-query CCDS DB by Protein ID:ENSMUSP00000035785
Original member Current member EBI ENSMUST00000170416.7 ENSMUSP00000127640.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170416.7Link to Ensembl Protein Viewer:ENSMUSP00000127640.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170416Re-query CCDS DB by Protein ID:ENSMUSP00000127640
Original member NCBI NM_207213.2 NP_997096.2 Updated not alive Link to Nucleotide Sequence:NM_207213.2Link to Protein Sequence:NP_997096.2Re-query CCDS DB by Nucleotide ID:NM_207213Re-query CCDS DB by Protein ID:NP_997096
Current member NCBI NM_207213.3 NP_997096.2 Accepted alive Link to Nucleotide Sequence:NM_207213.3Link to Protein Sequence:NP_997096.2Re-query CCDS DB by Nucleotide ID:NM_207213Re-query CCDS DB by Protein ID:NP_997096Link to BLAST:NP_997096.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997096.2 840 Q3ZT31 840 100% 0 0

Chromosomal Locations for CCDS 22287.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 46033742 46033822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46034402 46034502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46035538 46035719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46038455 46038521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46041317 46041434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46043968 46044132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46045186 46045299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46047291 46047431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46049366 46049497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46054319 46054480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46055848 46056123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46058467 46058598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46068056 46068237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46080222 46080292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46103515 46103701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46105119 46105291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46116182 46116398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46124062 46124083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGGATCGTGTTCTGAGAGATGTGTTCGACTACAGTTACAGAGACTATATTCTCTCCTGGTACGGGAACC
TCAGCAGAGATGACGGACAGCTCTACCATCTGCTCTTAGATGACTTCTGGGAAATTGTCAAGCAGATTCG
CCAGAGGCTGAGTCACGTGGATGTGGTTAAAGTTGTCTGTAATGATATTGTAAAGGCTTTGCTCACTCAC
TTCTGTGACCTGAAGGCTGCTACTGCCAGACATGAAGAACAGCCAAGGCCTTTTGTGTTGCATGCATGCT
TGAAGGATTCACATGATGAAGTAAGATTCCTTCAAACATGTTCTCAGGTTCTGGTGTTATGCCTTCTCCC
TTCTAAGGATATCCAGTCTCTCAGCTTACGTACAATGCTCGCAGAAATTCTTACGACAAAAGTCTTGAAG
CCAGTAGTGGAATTGCTGAGTAACCCTGACTACATTAACCAAATGCTGCTCAGGCAGTTGGAGTACAGAG
AGCAGATGAGTGAGCATCACAAGCGAGCCTACACGTACGCGCCTTCCTACGAGGACTTTATCAAGCTCAT
CAACAGCAACTCTGATGTGGACTTCCTGAAGCAGCTCAGGTATCAAATTGTAGTGGAGATAATCCAAGCA
ACTACAATCAGCAGCTTTCCCCAGCTGAAGAGACACAAGGGTAAGGAATCAGCTGCCATGAAAACTGATC
TCTTGAGGGCCAGGAACATGAAAAGGTACATTAACCAGCTGACTGTGGCAAAGAAGCAGTGTGAGAAGAG
AATCCGAATCCTGGGAGGTCCTGCCTATGACCAGCAAGAGGATGGAGCCTCGGATGAAGGGGAAGGGCCT
CAGAGCCAAAAGATTCTTCAGTTTGAAGATATTATGACCAATCCTTTCTACCGAGAGCGCTTTGGAACAT
ACATGGAACGGATAGACAAGCGGGCTCTAGTTGGCTTTTGGGAGTCTGCCGAACACCTGAAGAATGCTAA
CAAGAGTGAAATTCCACAATTAGTTAGTGAAATGTATCAGAATTTCTTCGTGGAAAGCAAGGAAATCTCC
GTGGAAAAGTCACTTTACAAAGAAATCCAGCAGTGTCTTGTGGGAAACAGAGGCATCGAGGTGTTCAGCA
AAATCCAAGCCGATGTGTCCGAGGTGCTGAGGGAGCGGTATTACCCCTCCTTCCTCGTCAGCGACCTGTA
TGAGAAGCTCATGCGTGAGGAAGAAGAGGAGGAGCCTGACGCTCAGCTGGCCTCTGAGAAGGATGAGCTG
GGTTCAGGAGGTGAGGCTGGTGAGGAGGCTGTAGAAGGCACCAGTGGGGTCAGTGATCCAGCCAGCTTTG
CTGTAATCAAACTCCGAGAGCTAAATGAGAAACTTGAATACAAAAGGCAAGCTCTAAGTTCTATTCAGAA
TGCACCAAAACCTGATAAGAAGATTATTTCCAAGTTGAAGGATGAAATACTTCTGATAGAGAAAGAATGC
ACGGCTCTTCAGCTGCACATGGCGAGAACAGATTGGTGGTGTGAGAACCTGGGCCTGTGGAGAGCATCCA
TCACCAGCGCAGAGGTGACAGAAGAGAATGGCGAGCAAATGCCTTGTTACTTTGTCAGGGTAAATCTACA
AGAAGTTGGAGGAGTTGAAACTAAGAACTGGACCGTCCCAAGAAGGCTCAGTGAGTTTCAGAATTTACAT
CGGAAACTTAGTGAGTGTGTCCCTTCTTTAAAAAAAGTCCAGTTGCCTTCTCTCAGTAAGCTGCCTTTCA
AATCTATAGATCACAAGTTCCTGGGAAAGTCAAGAAATCAGTTAAATGCATTTCTACAGAACCTGCTTTC
AGATGAAAGACTGTTCCAGAGCGAAGCACTTTATGCCTTTTTGAGCCCTTCTCCTGACTACCTCAAGGTC
ATTGATGTACAGGGGAAAAAGACCTCCTTCTCATTGTCTTCATTTCTGGAAAAACTTCCTCGTGACTTCT
TCTCCCATCAGGAGGAGGAGATAGAAGAGGACAGCGACCTGTCCGATTACGGGGATGATGTGGACGGGAA
GAAGGATTCCTTGGCTGAACCGTGTTTCATGCTGATCGGGGAGATTTTCGAACTTCGAGGAATGTTTAAA
TGGGTGCGAAGAACATTAATCGCTCTTGTTCAGGTCACGTTTGGAAGAACCATCAACAAGCAAATCCGCG
ACACGGTGAGCTGGATCTCCAGCGAGCAGATGCTGGTCTACTACATCAGTGCTTTCCGGGATGCCTTTTG
GCCAAACGGGAAACTGGCACCTCCAACAAGAATCCGAAGCGTGGCACAGAGTCAGGAGACGAAGCAGAGA
GCACAGCAGAAGCTGCTCGAGAACATTCCAGATACACTTCAGAGCCTTGTTGGACAGCAAAATGCCCGCC
ATGGTATAATAAAAATATTCAAGGCGCTGCAAGAGACAAAGGCCAACAAACACCTGCTCTATGTGCTGAT
GGAGCTGCTGCTGACAGAGCTCTGCCCTGAGCTGAGGGCTCACCTGGATCAGTTCAAAGCTGGCCAAGTC
TGA

Translation (840 aa):
MDRVLRDVFDYSYRDYILSWYGNLSRDDGQLYHLLLDDFWEIVKQIRQRLSHVDVVKVVCNDIVKALLTH
FCDLKAATARHEEQPRPFVLHACLKDSHDEVRFLQTCSQVLVLCLLPSKDIQSLSLRTMLAEILTTKVLK
PVVELLSNPDYINQMLLRQLEYREQMSEHHKRAYTYAPSYEDFIKLINSNSDVDFLKQLRYQIVVEIIQA
TTISSFPQLKRHKGKESAAMKTDLLRARNMKRYINQLTVAKKQCEKRIRILGGPAYDQQEDGASDEGEGP
QSQKILQFEDIMTNPFYRERFGTYMERIDKRALVGFWESAEHLKNANKSEIPQLVSEMYQNFFVESKEIS
VEKSLYKEIQQCLVGNRGIEVFSKIQADVSEVLRERYYPSFLVSDLYEKLMREEEEEEPDAQLASEKDEL
GSGGEAGEEAVEGTSGVSDPASFAVIKLRELNEKLEYKRQALSSIQNAPKPDKKIISKLKDEILLIEKEC
TALQLHMARTDWWCENLGLWRASITSAEVTEENGEQMPCYFVRVNLQEVGGVETKNWTVPRRLSEFQNLH
RKLSECVPSLKKVQLPSLSKLPFKSIDHKFLGKSRNQLNAFLQNLLSDERLFQSEALYAFLSPSPDYLKV
IDVQGKKTSFSLSSFLEKLPRDFFSHQEEEIEEDSDLSDYGDDVDGKKDSLAEPCFMLIGEIFELRGMFK
WVRRTLIALVQVTFGRTINKQIRDTVSWISSEQMLVYYISAFRDAFWPNGKLAPPTRIRSVAQSQETKQR
AQQKLLENIPDTLQSLVGQQNARHGIIKIFKALQETKANKHLLYVLMELLLTELCPELRAHLDQFKAGQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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