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Report for CCDS22233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22233.1 Public Mus musculus 8 Ppp2cb 23 108 98 CCDS HistoryNCBI Gene:19053Re-query CCDS DB by CCDS ID:22233.1Re-query CCDS DB by GeneID:19053See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009774.10 ENSMUSP00000009774.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009774.10Link to Ensembl Protein Viewer:ENSMUSP00000009774.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000009774Re-query CCDS DB by Protein ID:ENSMUSP00000009774
Original member NCBI NM_017374.3 NP_059070.1 Updated not alive Link to Nucleotide Sequence:NM_017374.3Link to Protein Sequence:NP_059070.1Re-query CCDS DB by Nucleotide ID:NM_017374Re-query CCDS DB by Protein ID:NP_059070
Current member NCBI NM_017374.4 NP_059070.1 Accepted alive Link to Nucleotide Sequence:NM_017374.4Link to Protein Sequence:NP_059070.1Re-query CCDS DB by Nucleotide ID:NM_017374Re-query CCDS DB by Protein ID:NP_059070Link to BLAST:NP_059070.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059070.1 309 P62715 309 100% 0 0

Chromosomal Locations for CCDS 22233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 33599917 33600018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33610655 33610864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33611748 33611921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33615450 33615539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33615666 33615827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33617027 33617145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33619122 33619194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGACGACAAGGCGTTCACCAAGGAGCTGGACCAGTGGGTGGAGCAGCTGAACGAGTGTAAGCAGCTGA
ACGAGAACCAAGTGCGGACGCTGTGCGAGAAGGCTAAGGAAATTTTAACGAAAGAATCAAATGTGCAAGA
GGTCCGCTGTCCTGTTACCGTCTGTGGAGATGTGCATGGCCAATTCCATGACCTTATGGAGCTCTTCAGA
ATTGGTGGGAAATCACCAGATACGAACTACCTATTCATGGGGGACTATGTAGACAGAGGGTACTACTCTG
TGGAGACTGTGACTCTTCTTGTAGCATTAAAGGTGCGCTATCCAGAGCGCATCACAATATTGCGAGGAAA
TCACGAAAGCCGGCAGATCACACAAGTGTATGGCTTTTATGATGAGTGCCTACGGAAGTATGGAAATGCC
AACGTGTGGAAATACTTTACAGATCTCTTTGATTATCTTCCACTTACAGCTTTAGTAGATGGACAGATAT
TCTGCCTCCACGGTGGCCTGTCTCCATCCATAGATACACTGGACCACATAAGAGCCCTGGATCGCTTGCA
AGAAGTTCCACATGAGGGCCCAATGTGTGATCTCTTATGGTCAGATCCGGATGACCGTGGCGGCTGGGGC
ATTTCTCCACGTGGTGCTGGCTACACATTTGGACAAGACATTTCTGAAACATTTAACCATGCCAACGGTC
TCACACTGGTGTCTCGTGCTCACCAGCTTGTAATGGAAGGATATAACTGGTGCCATGATCGGAATGTGGT
CACCATTTTTAGTGCGCCCAATTACTGCTACCGTTGTGGGAACCAGGCTGCTATCATGGAATTAGATGAC
ACTTTAAAATATTCATTTCTTCAGTTTGACCCAGCACCTCGTCGTGGAGAGCCTCATGTGACCCGGCGCA
CCCCAGACTACTTCCTGTAA

Translation (309 aa):
MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFR
IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNA
NVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWG
ISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDD
TLKYSFLQFDPAPRRGEPHVTRRTPDYFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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