NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22211.1 Public Mus musculus 8 Brf2 23 108 98 CCDS HistoryNCBI Gene:66653Re-query CCDS DB by CCDS ID:22211.1Re-query CCDS DB by GeneID:66653See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033877.5 ENSMUSP00000033877.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033877.5Link to Ensembl Protein Viewer:ENSMUSP00000033877.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033877Re-query CCDS DB by Protein ID:ENSMUSP00000033877
Original member Current member NCBI NM_025686.2 NP_079962.1 Accepted alive Link to Nucleotide Sequence:NM_025686.2Link to Protein Sequence:NP_079962.1Re-query CCDS DB by Nucleotide ID:NM_025686Re-query CCDS DB by Protein ID:NP_079962Link to BLAST:NP_079962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079962.1 420 Q3UAW9 420 99.7619% 0 1

Chromosomal Locations for CCDS 22211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27123894 27124620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27125820 27126141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27127460 27127519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27128421 27128574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGCCGAACGGAAGCCGCTGCCCGGATTGCGGCTCCTCCGAGCTCGTGGAAGATTCGCATTATTCTCAGA
GCCAGCTGGTGTGCTCCGACTGCGGCTGCGTGGTCACCGAAGGGGTCCTAACTACCACCTTTAGCGACGA
GGGCAACTTCAGGGAAGTGACATATTCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAA
CGAGATCTCCGTCGAGTAAGAGACCTGTGTCGGATTCTGAAGCTGCCGCTAACGTTTGAGGATACAGCAA
TCTCCTACTACCAGAAGGCATATCAGCTGTCTGGGATCCGAGCTGCCAGGCTGCAGAAGAAGGAAGTGTT
AGTCGGATGCTGTGTTTTAATCACCTGTCGGCAACATAACTGGCCCCTCACCATGGGAACCATCTGCACA
CTGCTCTATGCCGATCTGGACTTGTTTTCTGGCACCTACATGCAGATGGTAAAGCTCCTGGGGCTGGATG
TGCCCTCCCTGTGCCTGGCAGACTTGGTGAAGTCTTACTGCAGCAGCTTCAAACTGTTCCAAGCGTCCCC
GTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAGATGCTGTCTCGAACCTTGCTGTTGGTGGAGCTA
GCAGATGAGACGTGGCTAGTGACTGGACGGCATCCCTTGCCCATCATCACTGCAGCCACCTTCCTGGCAT
GGCAGTCTCTGCGGCCTTCAGACCGGCTGACCTGCTCTCTTGCCCAGTTTTGTAAATTGGCGAATGTGGA
CCTGCCCTACCCAGCTGCCTCTCGCCTGCAGGAGCTCCTGGCCGTGCTCCTTCAGATGGCCGGCCAGCTG
GCCTGGCTACAGGTTCTAAAACTTAACAAGCGGTCGGTGGTGAAACACATTGGTGACCTTCTCCAGCACC
GCCACATGCTGGTCCGAACGGCTTTTCGAGATGGAACAGCAGAAGTGGAGACCCAGCAGCAGCAGCAGCA
GCAGCAGGGACAAGGACAAGGACAGCAGGACGAGGTGGGGGATGGTCCCTTCGATTTGCCCAAGAGGAAA
CGTCCCGCCAGTCCCACTCCCCTCCTGCCCCCCTGCATGTTGAAGCCCCCCAAGCGGACCCACACCTTGC
CCCCCGAATCTGCAGTGACTGGCGATGAGGATATTTCAGATAGTGAAATAGAGCAGTATTTGCGCACCCC
TCAGGAAGTTAGAGACTTTGAGAGAGCCCAAGCTGCTAGCCAGGCAGCCATGCGTGTCCCTAACCCTCCC
TGA

Translation (420 aa):
MPNGSRCPDCGSSELVEDSHYSQSQLVCSDCGCVVTEGVLTTTFSDEGNFREVTYSRSTGENEQVSRCQQ
RDLRRVRDLCRILKLPLTFEDTAISYYQKAYQLSGIRAARLQKKEVLVGCCVLITCRQHNWPLTMGTICT
LLYADLDLFSGTYMQMVKLLGLDVPSLCLADLVKSYCSSFKLFQASPSVPAKYVEDKDKMLSRTLLLVEL
ADETWLVTGRHPLPIITAATFLAWQSLRPSDRLTCSLAQFCKLANVDLPYPAASRLQELLAVLLQMAGQL
AWLQVLKLNKRSVVKHIGDLLQHRHMLVRTAFRDGTAEVETQQQQQQQQGQGQGQQDEVGDGPFDLPKRK
RPASPTPLLPPCMLKPPKRTHTLPPESAVTGDEDISDSEIEQYLRTPQEVRDFERAQAASQAAMRVPNPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH