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Report for CCDS22111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22111.1 Public Mus musculus 8 Atp4b 23 108 98 CCDS HistoryNCBI Gene:11945Re-query CCDS DB by CCDS ID:22111.1Re-query CCDS DB by GeneID:11945See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033826.3 ENSMUSP00000033826.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033826.3Link to Ensembl Protein Viewer:ENSMUSP00000033826.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033826Re-query CCDS DB by Protein ID:ENSMUSP00000033826
Original member Current member NCBI NM_009724.2 NP_033854.1 Accepted alive Link to Nucleotide Sequence:NM_009724.2Link to Protein Sequence:NP_033854.1Re-query CCDS DB by Nucleotide ID:NM_009724Re-query CCDS DB by Protein ID:NP_033854Link to BLAST:NP_033854.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033854.1 294 P50992 294 100% 0 0

Chromosomal Locations for CCDS 22111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13386626 13386787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13387429 13387539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13388763 13388819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13389666 13389865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13389990 13390103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13393436 13393564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13396642 13396753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGCAGCCCTGCAGGAGAAGAAGTCATGCAGCCAGCGCATGGCCGAATTCCGGCACTACTGTTGGAACC
CGGACACTGGGCAAATGCTGGGCCGCACCCCAGCCCGGTGGGTGTGGATCAGCCTGTACTACGCAGGTTT
CTATGTGGTCATGACCGGGCTCTTTGCCTTGTGCATCTATGTGCTGATGCAGACCATTGACCCCTACACC
CCAGACTACCAGGACCAGTTAAAGTCACCAGGGGTAACCTTGAGACCGGACGTGTATGGGGAAAGAGGGC
TGAAGATTTCCTACAATGTCTCTGAAAACAGTTCCTGGGCTGGCCTCACACACACCCTGCACAGCTTCTT
AGCAGGCTATACCCCAGCATCCCAGCAGGACAGCATCAACTGTACATCTGAAAAGTACTTCTTCCAGGAG
AGCTTTGCAGCTCCAAACCACACCAAGTTCTCCTGCAAGTTCACTGCAGACATGCTACAAAACTGCTCAG
GCCTGGCGGACCCCAGCTTCGGCTTCGAGGAGGGGAAGCCCTGCTTCATTATTAAAATGAACAGAATTGT
CAAGTTCCTCCCCAGCAACAACACAGCTCCCCGAGTGGACTGCACCTTCCAGGATGATCCCCAAAAGCCC
CGGAAGGACACTGAACCCCTGCAGGTCGAGTACTATCCCCCCAATGGCACCTTCAGTCTCCACTATTTCC
CCTACTATGGCAAGAAAGCACAGCCCCACTACAGCAACCCTCTGGTGGCAGCCAAGCTCCTCAACGTCCC
CAAGAACATGCAAGTCAGCATCGTGTGCAAGATCCTGGCAGACCACGTGACCTTCAACAACCCCCATGAC
CCCTACGAAGGGAAGGTGGAGTTTAAACTTACAATACAGAAGTAA

Translation (294 aa):
MAALQEKKSCSQRMAEFRHYCWNPDTGQMLGRTPARWVWISLYYAGFYVVMTGLFALCIYVLMQTIDPYT
PDYQDQLKSPGVTLRPDVYGERGLKISYNVSENSSWAGLTHTLHSFLAGYTPASQQDSINCTSEKYFFQE
SFAAPNHTKFSCKFTADMLQNCSGLADPSFGFEEGKPCFIIKMNRIVKFLPSNNTAPRVDCTFQDDPQKP
RKDTEPLQVEYYPPNGTFSLHYFPYYGKKAQPHYSNPLVAAKLLNVPKNMQVSIVCKILADHVTFNNPHD
PYEGKVEFKLTIQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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