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Report for CCDS22108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22108.1 Public Mus musculus 8 Adprhl1 23 108 98 CCDS HistoryNCBI Gene:234072Re-query CCDS DB by CCDS ID:22108.1Re-query CCDS DB by GeneID:234072See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033825.10 ENSMUSP00000033825.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033825.10Link to Ensembl Protein Viewer:ENSMUSP00000033825.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033825Re-query CCDS DB by Protein ID:ENSMUSP00000033825
Original member NCBI NM_172750.4 NP_766338.1 Updated not alive Link to Nucleotide Sequence:NM_172750.4Link to Protein Sequence:NP_766338.1Re-query CCDS DB by Nucleotide ID:NM_172750Re-query CCDS DB by Protein ID:NP_766338
Current member NCBI NM_172750.5 NP_766338.1 Accepted alive Link to Nucleotide Sequence:NM_172750.5Link to Protein Sequence:NP_766338.1Re-query CCDS DB by Nucleotide ID:NM_172750Re-query CCDS DB by Protein ID:NP_766338Link to BLAST:NP_766338.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766338.1 353 Q8BGK2 353 100% 0 0

Chromosomal Locations for CCDS 22108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13235831 13235988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13242252 13242384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13242519 13242646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13245469 13245609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13246042 13246167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13248553 13248717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13253818 13254028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGAGAAGTTCAAGGCTGCAATGCTGTTGGGGAGTGTTGGAGATGCCCTCGGCTATGGAAACATCTGCA
GGGAGAACAGCGTTTTAGGCTCAATCCAGGAGGAGCTGCAAAAGACAGGGGGGCTGGACAGCCTTGTGCT
CTCACCTGGGAGGTGGCCAGTGAGCGACAACACCATCATGCACATGGCGACTGCTGAAGCCCTGACCACA
GACTACTGGTGCCTAGACGACCTGTACCGAGAGATGGTAAAGCGCTACGTGGAGACGGTGGAGACGCTCT
CAGAACATCGGCCGGATCCTTCCACGATCGAGGGCTGCTCCCAGCTGAAACCGGATAACTACCTCCTCGC
GTGGCATACGCCCTTCAGTGAAAAGGGTTCAGGATTCGGAGCTGCCACCAAAGCGATGTGCATCGGAATG
CGGTACTGGAAGCCAGAACGGCTGGAGACGCTCATCGAAGTCAGTATTGAGTGCGGTAGGATGACCCACA
ACCATCCTACAGGTTTCCTTGGGTCCCTGTGCACAGCACTGTTTGCCTCTTACGCACTACAGGGAAAGCC
ACTCGTGCAGTGGGGAAGAGAGATGCTGAAGGTGCTTCCTCTGGCTGAGGAGTACTGTAGGAAGACCATC
CGGCACATGGCAGAGTACCAAGAACACTGGTTTTACTTCGAAGCAAAATGGCAGTTTTATTTGGAGGAAA
GAAAAATCAGAGAAGATGCAGAAGACAAAGTCACCTTTCCTGACAACTATGACGCAGAGGAGAGAGACAA
GACCTACAAGAAGTGGAGCTCAGAAGGCCGAGGGGGGCGGCGCGGTCATGATGCCCCCATGATAGCCTAC
GATGCCCTTCTTGCTTCGGGGAGCAACTGGACCGAGCTGTGCCAGCGAGCCATGTTTCACGGAGGAGAGA
GTGGAGCGACAGGGACGATCGCCGGCTGCCTGTTCGGGTTGCTGCACGGCCTGGCCACTGTTCCACGGGG
CTTGTACCAGGAGCTGGAACACAAAGGCAGACTAGAAGATCTGGGCGCAGCCCTGCACCGCCTGTCCACA
GAAGAAAAGTAA

Translation (353 aa):
MEKFKAAMLLGSVGDALGYGNICRENSVLGSIQEELQKTGGLDSLVLSPGRWPVSDNTIMHMATAEALTT
DYWCLDDLYREMVKRYVETVETLSEHRPDPSTIEGCSQLKPDNYLLAWHTPFSEKGSGFGAATKAMCIGM
RYWKPERLETLIEVSIECGRMTHNHPTGFLGSLCTALFASYALQGKPLVQWGREMLKVLPLAEEYCRKTI
RHMAEYQEHWFYFEAKWQFYLEERKIREDAEDKVTFPDNYDAEERDKTYKKWSSEGRGGRRGHDAPMIAY
DALLASGSNWTELCQRAMFHGGESGATGTIAGCLFGLLHGLATVPRGLYQELEHKGRLEDLGAALHRLST
EEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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