NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22089.1 Public Mus musculus 8 Slc10a2 23 108 98 CCDS HistoryNCBI Gene:20494Re-query CCDS DB by CCDS ID:22089.1Re-query CCDS DB by GeneID:20494See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023835.2 ENSMUSP00000023835.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023835.2Link to Ensembl Protein Viewer:ENSMUSP00000023835.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000023835Re-query CCDS DB by Protein ID:ENSMUSP00000023835
Original member Current member NCBI NM_011388.3 NP_035518.1 Accepted alive Link to Nucleotide Sequence:NM_011388.3Link to Protein Sequence:NP_035518.1Re-query CCDS DB by Nucleotide ID:NM_011388Re-query CCDS DB by Protein ID:NP_035518Link to BLAST:NP_035518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035518.1 348 P70172 348 100% 0 0

Chromosomal Locations for CCDS 22089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 5086156 5086283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 5089024 5089181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 5091622 5091797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 5093261 5093349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 5098448 5098566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 5104807 5105183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGATAACTCCTCTGTCTGTCCCCCAAATGCAACTGTCTGCGAAGGCGATTCCTGCGTAGTACCTGAGA
GCAACTTCAATGCAATTCTCAATACAGTGATGAGCACTGTGCTCACCATCCTCTTAGCCATGGTGATGTT
TTCTATGGGGTGCAATGTGGAAGTCCACAAGTTCCTAGGACATATAAAGAGACCATGGGGTATCTTCGTG
GGCTTCCTCTGTCAGTTTGGAATCATGCCTCTCACAGGCTTTATCCTGTCTGTGGCCTCTGGCATCCTTC
CTGTACAGGCTGTAGTGGTGCTAATTATGGGTTGCTGCCCTGGAGGAACTGGCTCCAATATCCTGGCCTA
TTGGATAGATGGCGACATGGACCTCAGTGTTAGCATGACCACTTGCTCCACACTGCTTGCCCTTGGAATG
ATGCCTCTTTGCCTCTTCGTCTACACCAAGATGTGGGTTGACTCGGGAACGATTGTGATTCCCTATGATA
GCATTGGTATTTCTCTGGTTGCTCTTGTTATTCCTGTTTCCTTTGGAATGTTTGTAAATCACAAATGGCC
ACAAAAAGCGAAGATTATACTTAAAATTGGATCCATCACAGGTGTAATTCTCATTGTGCTCATAGCTGTG
ATTGGAGGAATACTGTACCAAAGTGCCTGGATCATTGAACCCAAACTGTGGATTATAGGAACAATATTCC
CTATAGCTGGCTACAGCCTGGGTTTCTTCCTGGCTAGACTAGCTGGTCAACCCTGGTACAGGTGCCGAAC
AGTAGCCTTGGAAACTGGAATGCAGAACACTCAGCTGTGCTCCACCATTGTACAGCTCTCCTTCTCCCCC
GAGGATCTCAACCTGGTGTTCACCTTCCCACTCATCTATACTGTTTTCCAGCTCGTCTTTGCAGCAGTAA
TATTAGGAATTTATGTCACATACAGGAAATGTTATGGAAAAAATGATGCTGAGTTTCTAGAGAAAACAGA
CAATGAAATGGACTCCAGGCCATCATTTGATGAGACAAACAAGGGATTTCAACCAGATGAGAAGTAG

Translation (348 aa):
MDNSSVCPPNATVCEGDSCVVPESNFNAILNTVMSTVLTILLAMVMFSMGCNVEVHKFLGHIKRPWGIFV
GFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGM
MPLCLFVYTKMWVDSGTIVIPYDSIGISLVALVIPVSFGMFVNHKWPQKAKIILKIGSITGVILIVLIAV
IGGILYQSAWIIEPKLWIIGTIFPIAGYSLGFFLARLAGQPWYRCRTVALETGMQNTQLCSTIVQLSFSP
EDLNLVFTFPLIYTVFQLVFAAVILGIYVTYRKCYGKNDAEFLEKTDNEMDSRPSFDETNKGFQPDEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH