NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22081.1 Public Mus musculus 8 Snapc2 23 108 98 CCDS HistoryNCBI Gene:102209Re-query CCDS DB by CCDS ID:22081.1Re-query CCDS DB by GeneID:102209See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011981.4 ENSMUSP00000011981.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011981.4Link to Ensembl Protein Viewer:ENSMUSP00000011981.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000011981Re-query CCDS DB by Protein ID:ENSMUSP00000011981
Original member Current member NCBI NM_133968.1 NP_598729.1 Accepted alive Link to Nucleotide Sequence:NM_133968.1Link to Protein Sequence:NP_598729.1Re-query CCDS DB by Nucleotide ID:NM_133968Re-query CCDS DB by Protein ID:NP_598729Link to BLAST:NP_598729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598729.1 359 Q91XA5 359 100% 0 0

Chromosomal Locations for CCDS 22081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 4253122 4253304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4254282 4254401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4254551 4254619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4254992 4255373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4255481 4255806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGAAGCCACCGCAGAGACGGCGGAGGGTCCCAGCACGCTACGTAGGTGAAGCTACGGGCCCCACCGCTT
GGAGCCCCCGCGAGATGCGGCATCTACTGAGACTACTTCAGGCTCGGCGGGGCCAGCCGGAGCCAGACGC
CGCGGAGCTGGCCCAGGAGCTGCGAGGCCGCAGCGAGGCCGAGATCTGTCGCTTTATCCAGCAGCTCAAG
GGCCGGGTGGTTCGAGAGGCCATTCAGAAGATGCAGCCAGGTGGCAGAGAGGGGCCAAGGCATCAAGGAA
CACCGCTCCCAGCCCCGGTAGAGGTATGGATGGATCTTGCTGAGAAACTAACAGGCCCAATGGAGGAAGC
CCTGACTGCAGCTTTCTCCCAGGTGCTCACCATTGCTGCTGCAGAACCCCTCAGCCTCCTGCACTCCAGG
CCAGGCAAGCCCACAAAGGCCCGTGGAAAGGCACTGGTGTTCTTGAGCAACCAAGATGGGCAGAAGGATC
CTGCATCTGAAGGTTCTGGGCCTGTCCCCATGACTGCTGCTGACCCTACTCGTGAGGCTTCTGTCTCTGA
CCCTAAGGCCTCTGGAGCCAACCCTGAGACCTCTGGCCTTGCCTCAGAGGTCACTGTCCCTGACCCTGAT
GCCCCAACCAAGTCCCTGGCTGGATCCTCCACAGAGAGAGACCTTGCTGTGGACTTTGAGAAGATCTACA
AATACCTTTCCTTCTCCTCCAGAGGTGGCCATGGCCCTGAGCTCTCAGCAGCTGAGTCAGCTGTGGTCCT
TAACCTGCTCATGGCACTTCCAGAGGAACTGTCCCACCTGCCTTGCACGGCCCTGCTGGAACATATGACC
AAAACATATGCTCAACTGATGGCTCCCCAGACCGCTCTCCCTGGAGAGAAGAGGCCCAGGCCTGGGACTG
AAGATGGAGGGACTGGCTCCACAGGGCCAGAGGAGCCTGACCAAGCTAGTCCTCAAGCTTCTGAGCCCAT
AGAGCCGAGGCTGGCCTGGAAAGCAGTTGGGATCTGCCCACTGAACCCGTTCCTGGTACCCCTGGGCCTC
GTGAGCCAGGCCCCCAGCCCTTCGAGGTGA

Translation (359 aa):
MKPPQRRRRVPARYVGEATGPTAWSPREMRHLLRLLQARRGQPEPDAAELAQELRGRSEAEICRFIQQLK
GRVVREAIQKMQPGGREGPRHQGTPLPAPVEVWMDLAEKLTGPMEEALTAAFSQVLTIAAAEPLSLLHSR
PGKPTKARGKALVFLSNQDGQKDPASEGSGPVPMTAADPTREASVSDPKASGANPETSGLASEVTVPDPD
APTKSLAGSSTERDLAVDFEKIYKYLSFSSRGGHGPELSAAESAVVLNLLMALPEELSHLPCTALLEHMT
KTYAQLMAPQTALPGEKRPRPGTEDGGTGSTGPEEPDQASPQASEPIEPRLAWKAVGICPLNPFLVPLGL
VSQAPSPSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH