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Report for CCDS22049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22049.1 Public Mus musculus 7 Cttn 23 108 98 CCDS HistoryNCBI Gene:13043Re-query CCDS DB by CCDS ID:22049.1Re-query CCDS DB by GeneID:13043See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103079.3 ENSMUSP00000099368.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103079.3Link to Ensembl Protein Viewer:ENSMUSP00000099368.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103079Re-query CCDS DB by Protein ID:ENSMUSP00000099368
Original member NCBI NM_007803.5 NP_031829.2 Updated not alive Link to Nucleotide Sequence:NM_007803.5Link to Protein Sequence:NP_031829.2Re-query CCDS DB by Nucleotide ID:NM_007803Re-query CCDS DB by Protein ID:NP_031829
Current member NCBI NM_007803.6 NP_031829.2 Accepted alive Link to Nucleotide Sequence:NM_007803.6Link to Protein Sequence:NP_031829.2Re-query CCDS DB by Nucleotide ID:NM_007803Re-query CCDS DB by Protein ID:NP_031829Link to BLAST:NP_031829.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031829.2 546 Q60598 546 100% 0 0

Chromosomal Locations for CCDS 22049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 144436965 144437101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144437949 144438020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144438766 144438931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144440009 144440098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144441699 144441847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144445803 144445872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144449560 144449615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144450978 144451088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144452027 144452137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144452548 144452658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144454676 144454786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144456441 144456495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144457669 144457779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144461179 144461308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144463303 144463376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144463912 144463998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGTGGAAAGCCTCTGCAGGCCATGCTGTGTCCATCACGCAGGATGATGGAGGAGCTGATGACTGGGAGA
CTGATCCTGATTTTGTGAATGATGTGAGTGAAAAGGAGCAGAGATGGGGTGCTAAAACCGTGCAGGGATC
GGGGCACCAGGAACACATCAACATTCACAAGCTTCGAGAGAATGTCTTCCAAGAACACCAGACGCTCAAG
GAGAAGGAGCTGGAAACGGGACCCAAGGCTTCCCACGGCTATGGCGGGAAGTTCGGTGTGGAGCAGGATA
GGATGGACAGATCAGCCGTGGGCCATGAGTACCAGTCGAAGCTTTCCAAGCACTGCTCACAAGTGGACTC
GGTCCGGGGCTTCGGAGGCAAGTTCGGTGTCCAGATGGACAGGGTGGATCAGTCTGCTGTAGGCTTTGAA
TACCAGGGGAAGACTGAGAAGCATGCCTCCCAGAAAGACTACTCTAGTGGCTTCGGTGGCAAATACGGTG
TGCAAGCTGACCGTGTAGACAAGAGTGCCGTGGGCTTTGACTACCAGGGCAAGACGGAGAAGCATGAGTC
TCAGAAAGATTACTCCAAAGGTTTTGGTGGCAAATATGGGATTGACAAGGACAAGGTGGATAAAAGTGCT
GTGGGCTTTGAGTATCAAGGCAAGACAGAGAAGCACGAATCCCAGAAAGACTATGTAAAAGGCTTTGGAG
GAAAGTTTGGTGTGCAGACAGACAGACAGGACAAGTGTGCCCTTGGCTGGGACCATCAGGAGAAGCTGCA
GCTGCATGAATCCCAAAAAGACTATAAGACTGGTTTCGGAGGCAAATTTGGTGTTCAGTCCGAGAGGCAG
GACTCCTCCGCTGTGGGGTTTGATTACAAGGAGAGATTGGCCAAGCACGAGTCCCAGCAAGACTATGCCA
AAGGATTCGGCGGGAAGTATGGGGTGCAGAAGGATCGGATGGACAAGAATGCATCCACCTTTGAAGAAGT
GGTCCAGGTGCCATCTGCCTATCAGAAGACTGTCCCCATTGAGGCCGTAACCAGCAAAACCAGTAATATC
CGTGCTAACTTTGAAAACCTGGCAAAGGAGAGAGAGCAGGAGGACAGGCGGAAGGCAGAAGCCGAGAGAG
CTCAGCGGATGGCCAAAGAAAGACAGGAGCAGGAGGAGGCGCGCAGGAAGCTGGAAGAGCAAGCCAGAGC
CAAGAAGCAGACGCCCCCTGCATCCCCTAGTCCTCAACCAATTGAAGACAGACCACCCTCCAGCCCCATC
TATGAGGATGCAGCTCCGTTCAAGGCCGAGCCGAGCTACCGAGGTAGCGAACCTGAGCCTGAGTACAGCA
TCGAGGCCGCAGGCATTCCTGAGGCTGGCAGCCAGCAAGGCCTGACCTATACATCAGAGCCCGTGTACGA
GACTACAGAGGCTCCTGGCCACTATCAAGCAGAGGATGACACCTACGATGGGTATGAGAGTGACCTGGGC
ATCACAGCCATCGCCCTGTATGACTACCAGGCTGCTGGCGATGATGAGATCTCCTTTGACCCTGATGACA
TCATCACCAACATAGAAATGATTGACGATGGCTGGTGGCGTGGGGTGTGCAAGGGCAGATACGGGCTCTT
CCCAGCCAACTATGTGGAGCTGCGGCAGTAG

Translation (546 aa):
MWKASAGHAVSITQDDGGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRENVFQEHQTLK
EKELETGPKASHGYGGKFGVEQDRMDRSAVGHEYQSKLSKHCSQVDSVRGFGGKFGVQMDRVDQSAVGFE
YQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQGKTEKHESQKDYSKGFGGKYGIDKDKVDKSA
VGFEYQGKTEKHESQKDYVKGFGGKFGVQTDRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQ
DSSAVGFDYKERLAKHESQQDYAKGFGGKYGVQKDRMDKNASTFEEVVQVPSAYQKTVPIEAVTSKTSNI
RANFENLAKEREQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKKQTPPASPSPQPIEDRPPSSPI
YEDAAPFKAEPSYRGSEPEPEYSIEAAGIPEAGSQQGLTYTSEPVYETTEAPGHYQAEDDTYDGYESDLG
ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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