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Report for CCDS22020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22020.1 Public Mus musculus 7 Tollip 23 108 98 CCDS HistoryNCBI Gene:54473Re-query CCDS DB by CCDS ID:22020.1Re-query CCDS DB by GeneID:54473See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001950.11 ENSMUSP00000001950.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001950.11Link to Ensembl Protein Viewer:ENSMUSP00000001950.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001950Re-query CCDS DB by Protein ID:ENSMUSP00000001950
Original member Current member NCBI NM_023764.4 NP_076253.1 Accepted alive Link to Nucleotide Sequence:NM_023764.4Link to Protein Sequence:NP_076253.1Re-query CCDS DB by Nucleotide ID:NM_023764Re-query CCDS DB by Protein ID:NP_076253Link to BLAST:NP_076253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076253.1 274 Q9QZ06 274 100% 0 0

Chromosomal Locations for CCDS 22020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141884367 141884581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141889507 141889597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141890702 141890854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141891984 141892166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141892740 141892889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141902276 141902308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGCGACCACCGTCAGCACGCAGCGCGGGCCGGTGTACATTGGTGAACTCCCCCAGGACTTCCTCCGTA
TAACACCCACACAACAGCAGCAGCAGATCCAGCTGGATGCCCAGGCAGCCCAGCAGCTGCAGTATGGAGG
AACAGTTGGTACCGTGGGTCGCCTCAGCATCACTGTGGTACAGGCAAAATTGGCAAAGAATTATGGCATG
ACTCGTATGGACCCTTACTGCCGTCTGCGTCTGGGCTATGCTGTTTATGAAACTCCCACAGCACACAATG
GGGCCAAGAACCCTCGCTGGAACAAAGTCATTCAGTGCACAGTGCCCCCAGGTGTGGACTCGTTCTACCT
TGAGATCTTCGATGAGCGCGCCTTCTCCATGGATGACCGCATAGCTTGGACCCACATCACCATCCCCGAG
TCCCTGAAGCAGGGCCAAGTGGAGGACGAGTGGTATAGCCTGAGTGGGAGGCAGGGCGATGACAAGGAGG
GCATGATTAACCTGGTCATGTCCTACACGTCCCTCCCAGCTGCCATGATGATGCCTCCTCAGCCTGTGGT
CCTGATGCCAACTGTGTACCAGCAGGGTGTTGGCTATGTGCCCATTGCAGGGATGCCTGCTGTCTGCAGC
CCTGGCATGGTGCCGATGGCCATGCCCCCACCAGCTGTGGCTCCTCAGCCCCGCTGTAATGAAGAGGACC
TCAAAGCTATCCAGGACATGTTTCCCAACATGGACAGGGAAGTAATCCGTTCTGTGCTTGAAGCCCAGAG
AGGGAACAAAGATGCTGCCATCAATTCCTTGCTGCAAATGGGTGAAGAGTCCTAG

Translation (274 aa):
MATTVSTQRGPVYIGELPQDFLRITPTQQQQQIQLDAQAAQQLQYGGTVGTVGRLSITVVQAKLAKNYGM
TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPE
SLKQGQVEDEWYSLSGRQGDDKEGMINLVMSYTSLPAAMMMPPQPVVLMPTVYQQGVGYVPIAGMPAVCS
PGMVPMAMPPPAVAPQPRCNEEDLKAIQDMFPNMDREVIRSVLEAQRGNKDAAINSLLQMGEES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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